Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_1667 |
Symbol | |
ID | 6065112 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | - |
Start bp | 1864425 |
End bp | 1868024 |
Gene Length | 3600 bp |
Protein Length | 1199 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 641601080 |
Product | YD repeat-containing protein |
Protein accession | YP_001724647 |
Protein GI | 170019693 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.620432 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCCTG CTCCGCTGCC GCCGTACCGG GTACTGACCG GCCTGGTGGA CCGCTTCGGG CGCACACTGA CCTTCCGGCG TGAGGCCGCA GGCGAATTTA CCGGGGAAAT CACCGGCGTG ACCGATGGCG CCGGCCGTCA GTTCCGTCTG GTGCTGACCA CGCAGGCACA ACGGGCAGAA AACGCCCGGC AGCAGGCCAT CGCCGCAGGA GCGAAAGGAC CGGATATCCC GGATTCACTG CCGGACTATA CGGAGTATGG CCGGGATAAC GGTATCCGCC TGTCAGCGGT GTGGCTCACG CACGACCCTG AATACCCGGA GAATTTACCT GCCGCGCCAC TGGTGCGCTA CGACTGGACG CCACGCGGTG AGCTGGCGGC GGTGTATGAC CGCAGCGGTA CGCAGATGCG CCACTTTACT TACGATGATA AATACCGGGG CCGGATGGTG GCGCACCGTT ACGCAGGCAG GCCGGAGATG CGTTACCGCT ATGACGACAC CGGGCGCGTG ACGGAGCAGT TTAATCCGGC AGGCTTAAGC TACACCTATC AGTATGAGAA AAACCGCATC ACCATCACCG ACAGCCTGAA CCGGCGCGAG GTGCTGCACA CGGAAGGTGA AGCCGGGCTG AAATGTGTGG TGAAAACGGA ACTCGCGGAT GGCAGCATCA CCCGAAGTAA ATTTGACTAT ATGGGGCGAC TCCAGTCACA GACGGATGCA GCAGGCCGGA CAACAGAATA CAGTCCGAAT GTGGTGACGG GACTCGTCAC GTGCATCACC ACGCCGGACG GCAGGAAATC GGAATTTTAC TATAACAATC AAAACCAGTT AACCTCAGCT ACCGGGCCTG ACGGACTGGA AATGCGCCGG AAATATGATG AGTACGGGCG TCTCACGCAG GAAACCGCCC GCAACGGCGA TGTCACCCGC TACAGTTATG ATAATCCGCA CAGTGAATTA CCCTCTGCAA CTGAAGATGC GACGGGTAGC CGCAAGCAGA TGACGTGGAG CCGCTACGGG CAGTTACAGA CCTTCACCGA CTGCTCAGGA TATGAAACGC ATTACGAATA CGACCGCTTT GGTCAGATGA TGGCGGTACA CCGTGAGGAA GGCATCAGCA CGTACAATAC CTATAATCCG CGCGGCCAGC TGGTCAGTTG GAAGGACACG CAGGGCCGTG AAACGCAGTA TGAATACAAC GCCGCAGGCG ACCTGACCGC CGTCATTACC CCGGACGGCA ACCGGAGTGA GACACTGTAC GATGCGTGGG GAAAGGCCGT CAGCACCACA CAGGGTGGTC TGACGCGCAG CATGGAATAC GATGCAGCGG GACGTGTCAT CAGCCTGACC AACGAGAACG GTAGCCATAC AGAATTTAGC TGGGATGTGC TTGACCGCCT GATACAGCAG CGCGGCTTTG ACGGGCGGAC GCAGCGTTAC CGTTATGACC TGACCGGGAA ACTCACGCAG AGCGAGGATG AGGGGCTTAT CACCCTCTGG CACTACGATG CATCGGACCG TATCACACAC CGCACGGTGA ACGGCGAACC GGCAGAGCAG TGGCGGTATA ACGACCACGG CTGGCTGACA GAAATCAGCC ATCTCAGCGA AGGCCACCGG GTGGCGGTGC ATTACGGTTA TAACCGTAAG GGACGTCTCA CAGGCGAGCG CCAGACGGTA CATCACCCGG AGACGGGGGA ACTGCTCTGG CAGCATGAGA CGAAACACAC TTACAACGAG CAGGGGCTGG CAAACCGCTT TCAGGCAGAC AGCCTGCCAC CGGTGGAGTG GCTAACGTAT GGCAGCGGTT ACCTGGCGGG AATGAAACTG GGCGACACGC CGCTGGTGGA GTACACACGG GACAGACTGC ACCGGGAAAC GGTGCGCAGC TTCGGCAATA ATGCATATGA ACTGACCAGC ACATACACTC ACGCAGGCCG GTTACAGAGT CAGCACCTGA ACAGCCTGGT GTATGACCGT GACTATGGCT GGAATGACAA TGGCGACCTG GTGCGCATCA GCGGCCCGCG GCAGACGCGG GAATACGGCT ACAGCGCCAC GGGCAGGCTG GAGAGTGTGC GCACCCTCGC ACCGGACCTG GATATCCGCA TCCCGTATGC CTCCGACCCG GCGGGAAACC GCCTGCCGGA CCCGGAGCTG CACCCGGACA GCACCCTCAC GGCGTGGCCG GATAACCGCA TCACCAAAGA CGCGCATTAC CTGTACCGTT ACGATGAATA CGGCAGGCTG ACGGAGAAGA CGGACCGCAT CCCGACGGGT GTGATACGGA CGGACGACGA GCGGACCCAC CACTACCACT ACGACAGCCA GCACCGGCTG GTGTTTTATA CGCGGATACA GCATGAGGAG CCACTGGTCG AGAGCCGCTA TCTCTACGAC CCGCTGGGCC GCCGGACGGG GAAACGGGTG TGGCGTCGCG AGCGTGATCT GACAGGATGG ATGTCGCTGT CGCGTAAACC GGAGGTGACG TGGTACGGAT GGGACGGCGA CCGGCTGACG ACGGTACAGA CCGACACCAC GCGTATCCAG ACGGTATACC AGCCGGGGAG CTTCGCGCCG CTCATCCGCA TCGAGACAGA GAACGGCGAA CTGGATAAAG CGCAGCGGCG CAGCCTGGTG GAGAAGTTAC AGCAGGAAGG GAGTGAGGAC GGTCACGGTG TGGTGTTCCC GGTGGAACTG GTGAGGATGC TGGACAGGCT GGAGGGGGAA ATCCGGGCAA ACTGCGTGAG CAGTGAAAGC CGCCAGTGGC TTGCACAGTG CGGGCTGACG GTGGAGCGGC TGGCGGCACA GATAGAGCCG GTTTATTTGC CTGAGCGAAA AATTCATCTT TATCACTGTG ACCACCGGGG ACTGCCGCTG GCGCTTATCA GTACCGAAGG GGCAACGGAA TGGCGTGGGG AGTATGACGA GTGGGGGAAT CAGCTTAATG AGGAGAACCC GCATCATCTG TTCCAGCCGT ACTGCCTGCC TGGGCAGCAG TATGATGAGG AGTCGGGGCT GTGCTATAAC CGTCACCGGT ACTATGATCC GTTGCAGGGA CGGTATATCA CCCAGGATCC GATTGGGCTG AGTGGTGGGC TGAATACATA TTCGTATCCA TTAAATCCAA TAAATGAAAT AGATCCTTTA GGATTAAAAG TGATCGTTGT AGCTAGTGAT CCTAATGAGG CAAAATTATT ACAGGAGGCA TATGCACAAT TAAATACAAC AAAGAGAGGA CAAGAAATAA CAAAACCGTT AGAAGATTCG AAAGATGTAT ATAATATATA CACAATACAT CGCGATGCTT TTTATTGCCC TGCCGGAACA ACAGATGTCT CCTGTCAAGG AAAAGAAAAA GCGGTGTTTA TTGAGCCCAA TGAGTGTGTA AAATTACCTA CGGCACAAGG CCTGGAGGTT ACATCACTGG CAGTTGAATT AGGACATGAA TTAGGTCATG CTCATGGAGT CCATGATGAT GGTGGGGATA GAATGAATAA CGTAAACTTA AATGAAAATC CTATCCGCGC TGGTTTAGGT GAAAACCCAC GGACTGCATA TGTAGTACCA CGAGTGGAGT GGGAAAAATG TCGAAAATAA
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Protein sequence | MLPAPLPPYR VLTGLVDRFG RTLTFRREAA GEFTGEITGV TDGAGRQFRL VLTTQAQRAE NARQQAIAAG AKGPDIPDSL PDYTEYGRDN GIRLSAVWLT HDPEYPENLP AAPLVRYDWT PRGELAAVYD RSGTQMRHFT YDDKYRGRMV AHRYAGRPEM RYRYDDTGRV TEQFNPAGLS YTYQYEKNRI TITDSLNRRE VLHTEGEAGL KCVVKTELAD GSITRSKFDY MGRLQSQTDA AGRTTEYSPN VVTGLVTCIT TPDGRKSEFY YNNQNQLTSA TGPDGLEMRR KYDEYGRLTQ ETARNGDVTR YSYDNPHSEL PSATEDATGS RKQMTWSRYG QLQTFTDCSG YETHYEYDRF GQMMAVHREE GISTYNTYNP RGQLVSWKDT QGRETQYEYN AAGDLTAVIT PDGNRSETLY DAWGKAVSTT QGGLTRSMEY DAAGRVISLT NENGSHTEFS WDVLDRLIQQ RGFDGRTQRY RYDLTGKLTQ SEDEGLITLW HYDASDRITH RTVNGEPAEQ WRYNDHGWLT EISHLSEGHR VAVHYGYNRK GRLTGERQTV HHPETGELLW QHETKHTYNE QGLANRFQAD SLPPVEWLTY GSGYLAGMKL GDTPLVEYTR DRLHRETVRS FGNNAYELTS TYTHAGRLQS QHLNSLVYDR DYGWNDNGDL VRISGPRQTR EYGYSATGRL ESVRTLAPDL DIRIPYASDP AGNRLPDPEL HPDSTLTAWP DNRITKDAHY LYRYDEYGRL TEKTDRIPTG VIRTDDERTH HYHYDSQHRL VFYTRIQHEE PLVESRYLYD PLGRRTGKRV WRRERDLTGW MSLSRKPEVT WYGWDGDRLT TVQTDTTRIQ TVYQPGSFAP LIRIETENGE LDKAQRRSLV EKLQQEGSED GHGVVFPVEL VRMLDRLEGE IRANCVSSES RQWLAQCGLT VERLAAQIEP VYLPERKIHL YHCDHRGLPL ALISTEGATE WRGEYDEWGN QLNEENPHHL FQPYCLPGQQ YDEESGLCYN RHRYYDPLQG RYITQDPIGL SGGLNTYSYP LNPINEIDPL GLKVIVVASD PNEAKLLQEA YAQLNTTKRG QEITKPLEDS KDVYNIYTIH RDAFYCPAGT TDVSCQGKEK AVFIEPNECV KLPTAQGLEV TSLAVELGHE LGHAHGVHDD GGDRMNNVNL NENPIRAGLG ENPRTAYVVP RVEWEKCRK
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