| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1043 |
|---|
| Symbol | |
|---|
| ID | 6066479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 1128517 |
|---|
| End bp | 1129917 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641600456 |
|---|
| Product | gamma-aminobutyrate transporter |
|---|
| Protein accession | YP_001724039 |
|---|
| Protein GI | 170019085 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
|---|
| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCAAT CATCGCAACC ACATGAGTTA GGCGGCGGGC TGAAGTCACG CCACGTCACC
ATGTTGTCTA TTGCCGGTGT TATCGGCGCA AGTCTGTTTG TCGGTTCCAG CGTCGCCATC
GCCGAAGCGG GCCCGGCGGT ATTACTGGCC TATCTGTTCG CCGGGCTACT GGTGGTTATG
ATTATGCGGA TGTTGGCGGA AATGGCGGTT GCCACGCCCG ATACCGGTTC GTTTTCCACC
TATGCCGATA AAGCCATTGG TCGCTGGGCG GGCTATACCA TCGGCTGGTT GTACTGGTGG
TTTTGGGTAC TGGTTATCCC GCTGGAAGCC AACATCGCCG CCATGATCCT GCACTCATGG
GTTCCAGGCA TTCCCATCTG GTTATTTTCC CTCGTCATTA CCCTCGCCTT AACTGGCAGT
AACTTATTAA GCGTTAAAAA CTACGGCGAA TTTGAGTTCT GGCTGGCGCT GTGCAAAGTC
ATCGCTATCC TGGCCTTTAT TTTCCTTGGT GCAGTCGCAA TTAGCGGTTT TTACCCGTAT
GCCGAAGTGA GCGGGATCTC AAGATTGTGG GATAGCGGCG GCTTTATGCC CAACGGTTTC
GGTGCGGTAT TAAGCGCGAT GTTGATCACC ATGTTCTCGT TTATGGGCGC AGAAATTGTC
ACCATTGCCG CCGCGGAATC CGACACGCCG GAAAAACATA TTGTCCGCGC CACCAACTCG
GTTATCTGGC GTATTTCTAT CTTCTATTTA TGTTCTATTT TTGTCGTCGT GGCATTAATT
CCGTGGAATA TGCCCGGACT AAAAGCCGTC GGTTCTTATC GCTCGGTACT GGAATTGCTC
AATATTCCCC ATGCGAAATT AATCATGGAC TGCGTGATAT TACTTTCCGT AACCAGTTGC
CTGAACTCGG CGCTGTATAC CGCGTCAAGG ATGCTCTACT CCTTAAGTCG TCGCGGTGAT
GCTCCCGCGG TAATGGGTAA AATCAACCGC AGTAAAACCC CGTACGTGGC GGTGTTACTC
TCCACCGGCG CGGCATTCTT AACGGTGGTG GTGAACTATT ACGCGCCTGC GAAGGTATTT
AAATTTCTGA TCGACAGCTC CGGCGCTATC GCCCTGCTGG TTTATTTAGT CATCGCCGTT
TCACAGTTGC GGATGCGCAA AATTCTGCGA GCAGAAGGAA GCGAAATTCG CTTGCGAATG
TGGCTTTATC CGTGGCTCAC CTGGCTAGTC ATCGGCTTTA TTACCTTTGT GTTGGTAGTG
ATGCTATTCC GTCCGGCGCA ACAGTTAGAA GTGATCTCCA CCGGCTTATT AGCGATAGGG
ATTATCTGTA CCGTGCCAAT TATGGCTCGC TGGAAAAAGC TGGTATTGTG GCAAAAAACA
CCCGTTCATA ATACGCGCTG A
|
|---|
| Protein sequence | MGQSSQPHEL GGGLKSRHVT MLSIAGVIGA SLFVGSSVAI AEAGPAVLLA YLFAGLLVVM
IMRMLAEMAV ATPDTGSFST YADKAIGRWA GYTIGWLYWW FWVLVIPLEA NIAAMILHSW
VPGIPIWLFS LVITLALTGS NLLSVKNYGE FEFWLALCKV IAILAFIFLG AVAISGFYPY
AEVSGISRLW DSGGFMPNGF GAVLSAMLIT MFSFMGAEIV TIAAAESDTP EKHIVRATNS
VIWRISIFYL CSIFVVVALI PWNMPGLKAV GSYRSVLELL NIPHAKLIMD CVILLSVTSC
LNSALYTASR MLYSLSRRGD APAVMGKINR SKTPYVAVLL STGAAFLTVV VNYYAPAKVF
KFLIDSSGAI ALLVYLVIAV SQLRMRKILR AEGSEIRLRM WLYPWLTWLV IGFITFVLVV
MLFRPAQQLE VISTGLLAIG IICTVPIMAR WKKLVLWQKT PVHNTR
|
|---|
| |