| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1028 |
|---|
| Symbol | |
|---|
| ID | 6066745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 1117096 |
|---|
| End bp | 1118160 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641600441 |
|---|
| Product | glycine betaine transporter membrane protein |
|---|
| Protein accession | YP_001724024 |
|---|
| Protein GI | 170019070 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.230597 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATC AAAATAATCC GTGGGATACC ACGCCAGCGG CGGACAGTGC CGCGCAATCC
GCAGACGCCT GGGGTACACC GACGACTGCA CCGACTGACG GCGGTGGTGC TGACTGGCTG
ACCAGTACGC CTGCGCCAAA CGTCGAGCAT TTTAATATTC TCGATCCGTT CCATAAAACG
CTGATCCCGC TCGACAGTTG GGTCACTGAA GGGATCGACT GGGTCGTTAC CCATTTCCGT
CCCGTCTTCC AGGGCGTGCG CGTTCCGGTT GATTATATCC TCAACGGTTT CCAGCAATTG
CTGCTGGGTA TGCCCGCACC GGTGGCGATT ATCGTTTTCG CTCTCATCGC CTGGCAGATT
TCCGGGGTCG GAATGGGTGT GGCGACGCTG GTTTCGCTGA TTGCCATCGG CGCAATCGGT
GCCTGGTCGC AGGCAATGGT GACTCTGGCG CTGGTGTTAA CCGCCCTGCT GTTCTGTATC
GTCATCGGTT TGCCGTTGGG GATATGGCTG GCGAGAAGTC CGCGAGCGGC GAAAATTATT
CGTCCACTGC TTGATGCCAT GCAGACCACG CCAGCGTTTG TTTATCTGGT GCCAATCGTC
ATGCTATTTG GTATCGGTAA CGTGCCGGGC GTGGTGGTGA CGATCATCTT TGCTCTGCCG
CCGATTATCC GTCTGACCAT TCTGGGGATT AACCAGGTTC CGGCGGATCT GATTGAAGCC
TCGCGCTCAT TCGGTGCCAG CCCGCGCCAG ATGCTGTTCA AAGTTCAGTT ACCGCTGGCG
ATGCCGACCA TTATGGCGGG CGTTAACCAG ACGCTGATGC TGGCCCTTTC TATGGTGGTC
ATCGCCTCGA TGATTGCCGT CGGCGGGTTG GGTCAGATGG TACTTCGCGG TATCGGTCGT
CTGGATATGG GGCTTGCCAC CGTTGGCGGC GTCGGGATTG TGATCCTCGC CATTATCCTC
GATCGTCTGA CGCAGGCCGT TGGGCGCGAC TCACGCAGTC GCGGCAACCG TCGCTGGTAC
ACCACTGGCC CTGTTGGTCT GCTGACCCGC CCATTCATTA AGTAA
|
|---|
| Protein sequence | MADQNNPWDT TPAADSAAQS ADAWGTPTTA PTDGGGADWL TSTPAPNVEH FNILDPFHKT
LIPLDSWVTE GIDWVVTHFR PVFQGVRVPV DYILNGFQQL LLGMPAPVAI IVFALIAWQI
SGVGMGVATL VSLIAIGAIG AWSQAMVTLA LVLTALLFCI VIGLPLGIWL ARSPRAAKII
RPLLDAMQTT PAFVYLVPIV MLFGIGNVPG VVVTIIFALP PIIRLTILGI NQVPADLIEA
SRSFGASPRQ MLFKVQLPLA MPTIMAGVNQ TLMLALSMVV IASMIAVGGL GQMVLRGIGR
LDMGLATVGG VGIVILAIIL DRLTQAVGRD SRSRGNRRWY TTGPVGLLTR PFIK
|
|---|
| |