| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_0925 |
|---|
| Symbol | |
|---|
| ID | 6068564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 1001320 |
|---|
| End bp | 1002660 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641600333 |
|---|
| Product | glucarate dehydratase |
|---|
| Protein accession | YP_001723921 |
|---|
| Protein GI | 170018967 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | [TIGR03247] glucarate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCTC AATTTACGAC GCCTGTTGTT ACTGAAATGC AGGTCATCCC GGTGGCGGGT
CATGACAGTA TGCTGATGAA TCTGAGTGGT GCACACGCAC CGTTCTTCAC GCGTAATATT
GTGATTATCA AAGATAATTC TGGTCACACT GGCGTAGGGG AAATTCCCGG CGGCGAGAAA
ATCCGTAAAA CGCTGGAAGA TGCGATTCCG CTGGTGGTAG GTAAAACGCT GGGTGAATAC
AAAAACGTTC TGACGCTGGT GCGTAATACT TTTGCCGATC GTGATGCCGG CGGGCGCGGT
TTGCAGACAT TTGATTTGCG TACCACTATT CATGTAGTTA CCGGGATAGA AGCGGCAATG
CTGGATCTGT TGGGGCAGCA TCTGGGGGTA AACGTGGCAT CGTTGCTGGG CGATGGCCAA
CAGCGTAGCG AAGTCGAAAT GCTCGGTTAT CTGTTCTTCG TCGGTAATCG CAAAGCCACA
CCGCTGCCGT ATCAAAGCCA GCCGGATGAT TCATGCGACT GGTATCGCCT GCGTCATGAA
GAAGCGATGA CACCGGATGC GGTGGTGCGC CTGGCGGAAG CGGCGTATGA AAAATATGGC
TTCAACGATT TCAAACTGAA AGGCGGTGTA CTGGCCGGGG AAGAAGAAGC CGAGTCTATT
GTGGCACTGG CGAAACGTTT CCCGCAGGCG CGTATTACGC TCGATCCTAA CGGTGCCTGG
TCGCTGAACG AAGCGATTAA AATTGGTAAA TACCTGAAAG GGTCGCTGGC TTATGCAGAA
GATCCGTGTG GTGCGGAGCA AGGTTTCTCC GGGCGTGAAG TGATGGCAGA GTTCCGTCGC
GCGACTGGCC TGCCGACTGC AACCAATATG ATCGCCACCG ACTGGCGGCA GATGGGCCAT
ACACTCTCGT TACAATCCGT TGATATCCCG CTGGCGGATC CGCATTTCTG GACGATGCAA
GGTTCGGTAC GTGTGGCGCA AATGTGCCAT GAATTTGGCC TGACCTGGGG TTCACACTCA
AACAACCACT TCGATATTTC CCTGGCGATG TTTACCCATG TTGCCGCCGC TGCACCGGGT
AAAATTACTG CTATTGATAC GCACTGGATC TGGCAGGAAG GTAATCAGCG CCTGACCAAA
GAACCGTTTG AGATCAAAGG CGGGCTGGTA CAGGTGCCAG AAAAACCGGG ACTGGGTGTA
GAAATCGATA TGGATCAAGT GATGAAAGCC CATGAGCTGT ATCAGAAACA CGGGCTTGGC
GCGCGTGACG ATGCGATGGG AATGCAGTAT CTGATTCCTG GCTGGACGTT CGATAACAAG
CGCCCGTGCA TGGTGCGTTA A
|
|---|
| Protein sequence | MSSQFTTPVV TEMQVIPVAG HDSMLMNLSG AHAPFFTRNI VIIKDNSGHT GVGEIPGGEK
IRKTLEDAIP LVVGKTLGEY KNVLTLVRNT FADRDAGGRG LQTFDLRTTI HVVTGIEAAM
LDLLGQHLGV NVASLLGDGQ QRSEVEMLGY LFFVGNRKAT PLPYQSQPDD SCDWYRLRHE
EAMTPDAVVR LAEAAYEKYG FNDFKLKGGV LAGEEEAESI VALAKRFPQA RITLDPNGAW
SLNEAIKIGK YLKGSLAYAE DPCGAEQGFS GREVMAEFRR ATGLPTATNM IATDWRQMGH
TLSLQSVDIP LADPHFWTMQ GSVRVAQMCH EFGLTWGSHS NNHFDISLAM FTHVAAAAPG
KITAIDTHWI WQEGNQRLTK EPFEIKGGLV QVPEKPGLGV EIDMDQVMKA HELYQKHGLG
ARDDAMGMQY LIPGWTFDNK RPCMVR
|
|---|
| |