| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_0873 |
|---|
| Symbol | |
|---|
| ID | 6064842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 937445 |
|---|
| End bp | 938206 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641600276 |
|---|
| Product | 2-deoxy-D-gluconate 3-dehydrogenase |
|---|
| Protein accession | YP_001723869 |
|---|
| Protein GI | 170018915 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTAA GTGCATTTTC TCTCGAAGGT AAAGTTGCGG TCGTCACTGG TTGTGATACT
GGACTGGGTC AGGGGATGGC GTTGGGGCTG GCGCAAGCGG GCTGTGACAT TGTTGGCATT
AACATCGTTG AACCGACTGA AACCATCGAG CAGGTCACAG CGCTGGGGCG TCGTTTTTTA
AGCCTGACCG CCGATCTGCG AAAGATTGAT GGTATTCCAG CACTGCTGGA TCGCGCGGTA
GCGGAGTTTG GTCATATTGA TATCCTGGTG AATAACGCCG GATTGATTCG CCGCGAAGAT
GCTCTCGAGT TCAGCGAAAA GGACTGGGAC GATGTCATGA ACCTGAATAT CAAGAGCGTA
TTCTTCATGT CTCAGGCAGC GGCGAAACAC TTTATCGCGC AAGGCAATGG CGGCAAGATT
ATCAATATCG CGTCAATGCT CTCCTTCCAG GGCGGGATCC GTGTGCCTTC TTATACCGCA
TCAAAAAGCG GCGTGATGGG TGTGACGCGA TTGATGGCGA ACGAATGGGC TAAACACAAC
ATTAATGTTA ATGCGATAGC CCCGGGTTAC ATGGCGACCA ACAATACTCA ACAACTACGG
GCAGATGAAC AACGTAGCGC GGAAATTCTC GACCGCATTC CAGCTGGTCG TTGGGGACTG
CCGAGTGACC TGATGGGGCC GATAGTGTTC CTTGCCTCCA GCGCTTCAGA TTATGTGAAT
GGTTATACCA TTGCCGTGGA TGGCGGTTGG CTGGCGCGTT AA
|
|---|
| Protein sequence | MILSAFSLEG KVAVVTGCDT GLGQGMALGL AQAGCDIVGI NIVEPTETIE QVTALGRRFL
SLTADLRKID GIPALLDRAV AEFGHIDILV NNAGLIRRED ALEFSEKDWD DVMNLNIKSV
FFMSQAAAKH FIAQGNGGKI INIASMLSFQ GGIRVPSYTA SKSGVMGVTR LMANEWAKHN
INVNAIAPGY MATNNTQQLR ADEQRSAEIL DRIPAGRWGL PSDLMGPIVF LASSASDYVN
GYTIAVDGGW LAR
|
|---|
| |