Gene EcolC_0820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_0820 
Symbol 
ID6064889 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp879130 
End bp879678 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content50% 
IMG OID641600225 
Productisopentenyl-diphosphate delta-isomerase 
Protein accessionYP_001723819 
Protein GI170018865 
COG category[I] Lipid transport and metabolism 
COG ID[COG1443] Isopentenyldiphosphate isomerase 
TIGRFAM ID[TIGR02150] isopentenyl-diphosphate delta-isomerase, type 1 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACGG AACACGTCAT TTTATTGAAT GCACAGGGAG TTCCCACGGG TACGCTGGAA 
AAGTATGCCG CACACACGGC AGACACCCTC TTACATCTCG CGTTCTCCAG TTGGCTGTTT
AATGCCAAAG GACAATTATT AGTTACCCGC CGCGCACTGA GCAAAAAAGC ATGGCCTGGC
GTGTGGACTA ACTCGGTTTG TGGGCACCCA CAACTGGGAG AAAGCAACGA AGACGCAGTG
ATCCGCCGTT GCCGTTATGA GCTTGGCGTG GAAATTACGC CTCCTGAATC TATCTATCCT
GACTTTCGCT ACCGCGCCAC CGATCCGAGT GGCATTGTGG AAAATGAAGT GTGTCCGGTA
TTTGCCGCAC GCACGACCAG TGCGTTACAG ATCAATGATG ATGAAGTGAT GGATTATCAA
TGGTGTGATT TAGCAGATGT ATTACACGGT ATTGATGCCA CGCCGTGGGC GTTCAGTCCG
TGGATGGTGA TGCAGGCAGC CAATAGTGAA GCAAGAAAAT TGTTGTCTGC TTTCGCGCAG
CACAATTAA
 
Protein sequence
MQTEHVILLN AQGVPTGTLE KYAAHTADTL LHLAFSSWLF NAKGQLLVTR RALSKKAWPG 
VWTNSVCGHP QLGESNEDAV IRRCRYELGV EITPPESIYP DFRYRATDPS GIVENEVCPV
FAARTTSALQ INDDEVMDYQ WCDLADVLHG IDATPWAFSP WMVMQAANSE ARKLLSAFAQ
HN