Gene EcolC_0536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_0536 
Symbol 
ID6064695 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp580500 
End bp582389 
Gene Length1890 bp 
Protein Length629 aa 
Translation table11 
GC content56% 
IMG OID641599943 
ProductATP-dependent RNA helicase DeaD 
Protein accessionYP_001723540 
Protein GI170018586 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00419869 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTGAAT TCGAAACCAC TTTTGCAGAT CTGGGCCTGA AGGCTCCTAT CCTTGAAGCC 
CTTAACGATC TGGGTTACGA AAAACCATCT CCAATTCAGG CAGAGTGTAT TCCACATCTG
CTGAATGGCC GCGACGTTCT GGGTATGGCC CAGACGGGGA GCGGAAAAAC TGCAGCATTC
TCTTTACCTC TGCTGCAGAA TCTTGATCCT GAGCTGAAAG CACCACAGAT TCTGGTGCTG
GCACCGACCC GCGAACTGGC GGTACAGGTT GCTGAAGCAA TGACGGATTT CTCTAAACAC
ATGCGCGGCG TAAATGTGGT TGCCCTGTAC GGCGGCCAGC GTTATGACGT GCAATTACGC
GCCCTGCGTC AGGGGCCGCA GATCGTTGTC GGTACTCCGG GCCGTCTGCT GGACCACCTG
AAACGTGGCA CTCTGGACCT CTCTAAACTG AGCGGTCTGG TTCTGGATGA AGCTGACGAA
ATGCTGCGCA TGGGCTTCAT CGAAGACGTT GAAACCATTA TGGCGCAGAT CCCGGAAGGT
CATCAGACCG CTCTGTTCTC TGCAACCATG CCGGAAGCGA TTCGTCGCAT TACCCGCCGC
TTTATGAAAG AGCCGCAGGA AGTGCGTATT CAGTCCAGCG TGACTACCCG TCCTGACATC
AGCCAGAGCT ACTGGACTGT GTGGGGTATG CGTAAAAACG AAGCACTGGT ACGTTTCCTG
GAAGCGGAAG ATTTTGATGC GGCGATTATC TTCGTTCGTA CCAAAAACGC GACTCTGGAA
GTGGCTGAAG CTCTTGAGCG TAACGGCTAC AATAGCGCCG CGCTGAACGG TGACATGAAC
CAGGCGCTGC GTGAGCAGAC ACTGGAACGC CTTAAAGACG GTCGTCTGGA CATCCTGATT
GCGACCGACG TTGCGGCCCG TGGCCTGGAC GTTGAGCGTA TCAGCCTGGT GGTTAACTAC
GATATCCCTA TGGATTCTGA GTCTTACGTT CACCGTATCG GTCGTACCGG TCGTGCGGGT
CGTGCTGGCC GCGCGCTGTT GTTCGTTGAG AACCGCGAGC GTCGTCTGCT GCGCAACATT
GAACGTACTA TGAAGCTGAC TATTCCGGAA GTAGAACTGC CGAACGCAGA ACTGCTGGGC
AAACGCCGTC TGGAAAAATT CGCCGCTAAA GTACAGCAGC AGCTGGAAAG CAGCGATCTG
GATCAATACC GCGCACTGCT GAGCAAAATT CAGCCGACTG CAGAAGGTGA AGAGCTGGAC
CTCGAAACTC TGGCCGCCGC ACTGCTGAAA ATGGCACAGG GTGAACGTAC TCTGATCGTA
CCGCCAGATG CGCCGATGCG TCCGAAACGT GAATTCCGTG ACCGTGATGA CCGTGGTCCG
CGCGATCGTA ACGACCGTGG CCCGCGTGGT GACCGTGAAG ATCGTCCGCG TCGTGAACGT
CGTGATGTTG GCGATATGCA GCTGTACCGC ATTGAAGTGG GCCGCGATGA TGGTGTTGAA
GTTCGTCATA TCGTTGGTGC GATTGCTAAC GAAGGCGACA TCAGCAGCCG TTACATTGGT
AACATCAAGC TGTTTGCTTC TCACTCCACC ATCGAACTGC CGAAAGGTAT GCCGGGTGAA
GTGCTGCAAC ACTTTACGCG CACTCGCATT CTCAACAAGC CGATGAACAT GCAGTTACTG
GGCGATGCAC AGCCGCATAC TGGCGGTGAG CGTCGTGGCG GTGGTCGTGG TTTCGGTGGC
GAACGTCGTG AAGGCGGTCG TAACTTCAGC GGTGAACGCC GTGAAGGTGG TCGTGGTGAT
GGTCGTCGTT TTAGCGGCGA ACGTCGTGAA GGCCGCGCAC CGCGTCGTGA TGACTCTACC
GGTCGTCGTC GTTTCGGTGG CGATGCGTAA
 
Protein sequence
MAEFETTFAD LGLKAPILEA LNDLGYEKPS PIQAECIPHL LNGRDVLGMA QTGSGKTAAF 
SLPLLQNLDP ELKAPQILVL APTRELAVQV AEAMTDFSKH MRGVNVVALY GGQRYDVQLR
ALRQGPQIVV GTPGRLLDHL KRGTLDLSKL SGLVLDEADE MLRMGFIEDV ETIMAQIPEG
HQTALFSATM PEAIRRITRR FMKEPQEVRI QSSVTTRPDI SQSYWTVWGM RKNEALVRFL
EAEDFDAAII FVRTKNATLE VAEALERNGY NSAALNGDMN QALREQTLER LKDGRLDILI
ATDVAARGLD VERISLVVNY DIPMDSESYV HRIGRTGRAG RAGRALLFVE NRERRLLRNI
ERTMKLTIPE VELPNAELLG KRRLEKFAAK VQQQLESSDL DQYRALLSKI QPTAEGEELD
LETLAAALLK MAQGERTLIV PPDAPMRPKR EFRDRDDRGP RDRNDRGPRG DREDRPRRER
RDVGDMQLYR IEVGRDDGVE VRHIVGAIAN EGDISSRYIG NIKLFASHST IELPKGMPGE
VLQHFTRTRI LNKPMNMQLL GDAQPHTGGE RRGGGRGFGG ERREGGRNFS GERREGGRGD
GRRFSGERRE GRAPRRDDST GRRRFGGDA