| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_A0154 |
|---|
| Symbol | |
|---|
| ID | 6106532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010488 |
|---|
| Strand | - |
|---|
| Start bp | 121793 |
|---|
| End bp | 122677 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641614893 |
|---|
| Product | drug/metabolite transporter |
|---|
| Protein accession | YP_001740034 |
|---|
| Protein GI | 170650899 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | [TIGR00950] Carboxylate/Amino Acid/Amine Transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 0.98831 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTAC GCACGCCCGA TTTATTGTTC ACAGCGATAG CACCTGCCAT TTGGGGCAGC
ACCTACATTG TCACCACCCA ATACCTGCCG AACTTCTCAC CGATGACGGT CGCGATGCTG
CGGGCGTTGC CGGCGGGTTT ATTGCTCGTG ATGATCGTCC GACAGATTCC AACGGGAATC
TGGTGGATGC GCATCTTCAT CCTCGGCGCA CTTAATATTT CGCTATTCTG GAGCTTGTTG
TTTATTTCGG TCTACCGCCT GCCGGGCGGG GTCGCGGCGA CGGTAGGCGC TGTGCAGCCG
CTGATGGTCG TGTTCATCTC TGCCGCTCTG CTAGGTAGCC CGATACGATT GATGGCGGTC
CTGGGGGCTA TTTGCGGAAC TGCGGGCGTG GCGCTGTTGG TGTTGACACC AAACGCAGCG
CTAGATCCTG TCGGCGTCGC AGCGGGCCTG GCGGGGGCGG TTTCCATGGC GTTCGGAACC
GTGCTGACCC GCAAGTGGCA ACCTCCCGTG CCTCTGCTCA CCTTTACCGC CTGGCAACTG
GCGGCCGGAG GACTTCTGCT CGTTCCAGTA GCTTTAGTGT TTGATCCGCC AATCCCGATG
CCTACAGGAA CCAATGTTCT CGGCCTGGCG TGGCTCGGCC TGATCGGAGC GGGTTTAACC
TACTTCCTTT GGTTCCGGGG GATCTCGCGA CTCGAACCTA CAGTTGTTTC CTTACTGGGC
TTTCTCAGCC CGGGGACCGC CGTGTTGCTA GGATGGTTGT TCTTGGATCA GACGCTGAGT
GCGCTTCAAA TCATCGGCGT CCTGCTCGTG ATCGGGAGTA TCTGGCTGGG CCAACGTTCC
AACCGCACTC CTAGGGCGCG TATAGCTTGC CGGAAGTCGC CTTGA
|
|---|
| Protein sequence | MSLRTPDLLF TAIAPAIWGS TYIVTTQYLP NFSPMTVAML RALPAGLLLV MIVRQIPTGI
WWMRIFILGA LNISLFWSLL FISVYRLPGG VAATVGAVQP LMVVFISAAL LGSPIRLMAV
LGAICGTAGV ALLVLTPNAA LDPVGVAAGL AGAVSMAFGT VLTRKWQPPV PLLTFTAWQL
AAGGLLLVPV ALVFDPPIPM PTGTNVLGLA WLGLIGAGLT YFLWFRGISR LEPTVVSLLG
FLSPGTAVLL GWLFLDQTLS ALQIIGVLLV IGSIWLGQRS NRTPRARIAC RKSP
|
|---|
| |