| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_A0141 |
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| Symbol | vagD |
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| ID | 6106455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010488 |
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| Strand | + |
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| Start bp | 108968 |
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| End bp | 109384 |
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| Gene Length | 417 bp |
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| Protein Length | 138 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641614880 |
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| Product | plasmid maintenance protein VagD |
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| Protein accession | YP_001740021 |
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| Protein GI | 170650829 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1487] Predicted nucleic acid-binding protein, contains PIN domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAACAAGA CTTATATGCT TGATACCTGT ATCTGCTCGT TCATCATGCG TGAACAGCCA
GAAGCCGTCC TGAAGCGTCT GGAGCAGGCG GTGCTACGCG GCCACCGTAT AGTGGTCTCG
GCCATCACCT ACTCTGAAAT GCGCTTCGGG GCTACCGGCC CAAAGGCCTC ACCACGTCAC
GTCCAACTGG TCGATGAATT CTGCGCCCGC CTCGATGCCA TCCTGCCCTG GGATCGCGCC
GCAGTAGACG CCACCACGAA GATTAAAGTG GCACTGCGGC TGGCCGGGAC GCCGATCGGC
CCGAACGACA CGGCGATTGC CGGGCACGCC ATCGCCGCCG GGGCGATACT GGTAACGAAT
AATACAAGAG AATTTGAGCG AGTGCCTGAC CTGGTGCTGG AAGACTGGGT GAAGTAA
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| Protein sequence | MNKTYMLDTC ICSFIMREQP EAVLKRLEQA VLRGHRIVVS AITYSEMRFG ATGPKASPRH
VQLVDEFCAR LDAILPWDRA AVDATTKIKV ALRLAGTPIG PNDTAIAGHA IAAGAILVTN
NTREFERVPD LVLEDWVK
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