| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_A0015 |
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| Symbol | traH |
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| ID | 6106505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010488 |
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| Strand | - |
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| Start bp | 17648 |
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| End bp | 19024 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641614762 |
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| Product | conjugal transfer pilus assembly protein TraH |
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| Protein accession | YP_001739903 |
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| Protein GI | 170650800 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.253255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCCAC GCATTAAACC TCTTCTGGTT CTTTGTGCTG CTTTACTGAC GGTCACACCC
GCAGCGTCAG CGGATGTGAA CAGCGACATG AATCAGTTCT TTAACAAGCT GGGCTTCGCC
TCCAATACCA CACAGCCGGG CGTCTGGCAG GGGCAGGCCG CCGGTTATGC TTACGGTGGC
TCCCTGTATG CCCGTACTCA GGTCAAAAAT GTTCAGCTGA TTTCCATGAC GCTGCCGGAT
ATCAATGCCG GATGTGGCGG CATCGACGCC TACCTCGGCT CGTTCAGTTT TATTAATGGC
GAGCAGCTGC AGCGTTTTGT TAAGCAGATT ATGAGCAATG CTGCCGGTTA CTTTTTTGAC
CTTGCCCTGC AGACAACGGT GCCGGAAATC AAAACCGCAA AAGACTTCCT GCAGAAAATG
GCAAGCGACA TTAACAGTAT GAACCTCAGT TCCTGCCAGG CGGCACAGGG GATTATCGGC
GGGCTTTTCC CCCGGACGCA GGTGTCCCAG CAGAAAGTCT GTCAGGACAT TGCCGGTGAG
AGCAATATTT TTGCTGACTG GGCGGCTTCC CGGCAGGGAT GTACCGTTGG CGGGAAATCT
GACAGTGTCA GGGATAAAGC CAGCGACAAG GATAAGGAGC GGGTGACCAA AAACATCAAC
ATCATGTGGA ATGCGCTTTC CAAAAACAGA ATGTTTGACG GCAACAAAGA GCTGAAAGAG
TTTGTGATGA CGCTGACCGG CTCACTGGTG TTTGGTCCTA ACGGCGAAAT CACACCCTTG
TCAGCCAGAA CCACTGACCG CTCAATTATC CGGGCCATGA TGGAAGGCGG CACAGCAAAA
ATTTATCACT GCAACGATTC TGATAAATGC CTGAAAGTGG TGGCAGACAC ACCGGTGACC
ATCAGCCGGG ATAATGCACT GAAGTCTCAG ATTACTAAAC TTCTGGCCAG CATTCAGAAC
AAGGCTGTCA GTGACACGCC TCTGGATGAC AAGGAAAAAG GCTTTATTTC CAGTACCACC
ATCCCCGTCT TCAAATACCT GGTTGACCCG CAGATGCTCG GTGTTTCCAA CAGTATGATT
TACCAGCTGA CGGACTATAT CGGTTACGAC ATCCTGCTGC AGTACATTCA GGAGCTGATA
CAGCAGGCCC GGGCGATGGT GGCCACGGGA AATTATGACG AAGCAGTTAT CGAACATATT
AACGACAACA TGAATGATGC CACCCGGCAG ATTGCGGCGT TTCAGTCGCA GGTGCAGGTA
CAGCAGGATG CGCTGCTGGT TGTCGATCGT CAGATGAGCT ACATGCGTCA GCAGCTTTCC
GCCCGCATGC TCAGTCGTTA CCAGAACAAC TATCACTTCG GAGGGAGCAC GCTGTGA
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| Protein sequence | MMPRIKPLLV LCAALLTVTP AASADVNSDM NQFFNKLGFA SNTTQPGVWQ GQAAGYAYGG
SLYARTQVKN VQLISMTLPD INAGCGGIDA YLGSFSFING EQLQRFVKQI MSNAAGYFFD
LALQTTVPEI KTAKDFLQKM ASDINSMNLS SCQAAQGIIG GLFPRTQVSQ QKVCQDIAGE
SNIFADWAAS RQGCTVGGKS DSVRDKASDK DKERVTKNIN IMWNALSKNR MFDGNKELKE
FVMTLTGSLV FGPNGEITPL SARTTDRSII RAMMEGGTAK IYHCNDSDKC LKVVADTPVT
ISRDNALKSQ ITKLLASIQN KAVSDTPLDD KEKGFISSTT IPVFKYLVDP QMLGVSNSMI
YQLTDYIGYD ILLQYIQELI QQARAMVATG NYDEAVIEHI NDNMNDATRQ IAAFQSQVQV
QQDALLVVDR QMSYMRQQLS ARMLSRYQNN YHFGGSTL
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