Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4899 |
Symbol | |
ID | 6146469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 5018936 |
End bp | 5019799 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641619702 |
Product | RpiR family transcriptional regulator |
Protein accession | YP_001746809 |
Protein GI | 170682954 |
COG category | [K] Transcription |
COG ID | [COG1737] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTATA GCATCGATAT CATCTCCTGC ATTACCGAAC GGTTTATGGC GTTAACAGCC ACTGAAAAGC GTATCGCACA ATTTATTCTT GATGACGTCT CTGCCGCAGT AGAGTTGCCA ATTGCTGAGC TGGCACGGTT AACGCAAACC AGTCAGGCGT CGGTGACGCG TTTTGCCCGT GCACTGGGGT GCAAAGATGT CCGCGAGTTG AAAGTCAAAC TGGCGCAGTC ACTGGCTGTC GGGCAGCGGT TTATTCTCGA TGTACCGGAT CTTGACGGTG TTCAGGGGAT CTACGAAGCG ATTATTAGCG TGCTGGAGAC GCATCGTCGT TCGCTGGATA TGAATGCCAT CAGCCAGGCT GTAAGCTGGT TAAGTCAGGC GCGGCAAATT CTTGCGTTAG GAACTGGCGG CGGTTCCACT ATCTGTTCAC AGGAGATTCA GTACCGTTTA TTCCGTCTGG GGCTACCGGT GGTCAGTCAG AATGATGCCC TGATGATGAG AATGATGTGC TCGGCAGTCA TGCCGCAGGA TGTGGTGATT GTGCTTTCGC TGGGCGGTTA TACACCGGAA ATCATCGAAA GTGCGGCAAT CGCCCGTCAG TATGGCGCGC GTGTTATTGC CATTACGCCA GCACAAACAC CGCTGGCGGA ACAGGTGGAT CTGGTATTGC CGTTACTGGT TCAGGAAAGT GATTACATCT TTAAGCCCAC CCCTTCCCGC TACGCGATGT TAGCCATGGT CGATGTACTG GCAACAGAAC TGGCAATGGC AAATAAAGCG CAGGCGAAAG ATCGCCTGCG GCGGATAAAA CTCGTGTTAG ACAGCCACCG TGGGGGCGCT AACCGCCAGC CACTTGGCGA TTAG
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Protein sequence | MAYSIDIISC ITERFMALTA TEKRIAQFIL DDVSAAVELP IAELARLTQT SQASVTRFAR ALGCKDVREL KVKLAQSLAV GQRFILDVPD LDGVQGIYEA IISVLETHRR SLDMNAISQA VSWLSQARQI LALGTGGGST ICSQEIQYRL FRLGLPVVSQ NDALMMRMMC SAVMPQDVVI VLSLGGYTPE IIESAAIARQ YGARVIAITP AQTPLAEQVD LVLPLLVQES DYIFKPTPSR YAMLAMVDVL ATELAMANKA QAKDRLRRIK LVLDSHRGGA NRQPLGD
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