Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4844 |
Symbol | fimD1 |
ID | 6142689 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 4949785 |
End bp | 4952355 |
Gene Length | 2571 bp |
Protein Length | 856 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641619648 |
Product | outer membrane usher protein fimD |
Protein accession | YP_001746755 |
Protein GI | 170679720 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCTGGTT TTTTTGTCCG GCTCTTTGTT GCCTGTGCTT TTGCCGCACA GGCACCTTTG TCATCTGCCG AACTCTATTT TAACCCGCGT TTTTTAGCGG ATGATCCCCA GGCTGTGGCT GATTTATCGC GTTTTGAGAA TGGGCAAGAA TTACCGCCAG GGACGTATCG TGTCGATATC TATTTGAATA ATGGTTATAT GGCAACGCGT GATGTCACAT TTAATACGGG CGACAGTGAA CAAGGGATTG TTCCCTGCCT GACACGCGCG CAACTTGCCA GTATGGGGCT GAATACGGCT TCTGTCTCCG GTATGAATCT GCTGGCGGAT GATGCCTGCG TGCCATTAAC CTCAATGATA CATGACGCTA CTGCGCAACT GGATGTGGGT CAGCAGCGAC TCAACCTGAC GATCCCTCAG GCATTTATGA GTAATCGCGC GCGTGGTTAT ATTCCTCCTG AGTTATGGGA TCCCGGTATT AATGCCGGAT TGCTCAATTA TAATTTCAGC GGAAATAGTG TACAGAATCG AATTGGGGGT AACAGCCATT ATGCATATTT AAACCTACAG AGTGGGTTAA ATATTGGTGC GTGGCGTTTA CGCGACAATA CCACCTGGAG TTATAACAGT AGCGACAGTT CATCAGGTAG CAAAAATAAA TGGCAGCATA TCAATACCTG GCTTGAGCGA GACATAATAC CGTTACGTTC CCGGCTGACG CTGGGTGATG GTTATACTCA GGGCGATATT TTCGATGGTA TTAACTTTCG CGGCGCACAA TTGGCCTCAG ATGACAATAT GTTACCCGAT AGCCAAAGAG GATTTGCCCC GGTGATCCAC GGTATTGCTC GTGGTACTGC ACAGGTCACT ATTAAACAAA ATGGGTATGA CATTTATAAT AGTACGGTGC CACCGGGGCC TTTTACCATC AACGATATCT ATGCCGCAGG TAATAGTGGT GACTTGCAGG TAACGATCAA AGAGGCTGAC GGCAGCACGC AGATTTTTAC CGTACCCTAT TCGTCAGTCC CGCTTTTGCA ACGTGAAGGG CATACTCGTT ATTCCATTAC GGCAGGAGAA TACCGTAGTG GAAATGCGCA ACAGGAAAAA CCCCGCTTTT TCCAGAGTAC ATTACTCCAC GGCCTTCCGG CTGGCTGGAC AATATATGGT GGAACGCAAC TGGCGGATCG TTATCGTGCT TTTAATTTCG GTATCGGGAA AAACATGGGG GCACTGGGTG CTCTGTCTGT GGATATGACG CAGGCTAATT CCACACTTCC CGATGACAGT CAGCATGACG GACAATCGGT GCGTTTTCTC TATAACAAAT CGCTCAATGA GTCAGGCACG AATATTCAGT TAGTGGGTTA CCGTTATTCG ACCAGCGGAT ATTTTAATTT CGCTGATACA ACATACAGTC GAATGAATGG CTACAACATC GAAACACAGG ACGGAGTTAT TCAGGTTAAG CCGAAATTCA CCGACTATTA CAACCTCGCT TATAACAAAC GCGGGAAATT ACAGCTCACC GTTACTCAGC AACTCGGGCG CTCATCAACA CTGTATTTGA GTGGTAGCCA TCAAACTTAT TGGGGAACGA ATAATGTCGA TGAGCAATTC CAGGCTGGTT TAAATACTGC ATTCGAAGAT ATCAACTGGA CGCTCAGCTA TAGCCTGACG AAAAACGCCT GGCAAAAAGG ACGGGATCAG ATGTTAGCGC TTAACGTCAA TATTCCTTTC AGCCACTGGC TGCGTTCTGA CAGTAAATCT CAGTGGCGAC ATGCCAGTGC CAGTTACAGC ATGTCACACG ATCTCAACGG TCGGATGACC AATCTGGCCG GTGTATACGG TACGTTGCTG GAAGACAACA ACCTCAGCTA TAGCGTGCAA ACCGGTTACG CCGGGGGAGG TGATGGTAAT AGCGGAAGTA CAGGCTACGC CACGCTGAAT TATCGCGGTG GTTACGGCAA TGCCAATATC GGTTACAGCC ATAGCGATGA TATTAAGCAG CTCTATTACG GAGTCAGCGG TGGGGTACTG GCTCATGCCA ATGGCGTAAC GCTGGGGCAG CCGTTAAACG ATACGGTGGT GCTTGTTAAA GCGCCTGGCG CAAAAGATGC AAAAGTCGAA AACCAGACAG GAGTGCGTAC CGACTGGCGG GGTTATGCCG TGCTGCCATA TGCCACTGAA TATCGGGAAA ACAGAGTGGC GCTGGATACC AATACCCTGG CTGATAACGT CGATTTAGAT AACTCGGTCG CTAACGTTGT TCCCACTCGT GGGGCGATCG TGCGAGCAGA GTTTAAAGCG CGCGTTGGGA TAAAACTGCT CATGACGCTA ACCCACAATA ATAAGCCGCT GCCGTTTGGG GCGATGGTGA CATCAGAGAG TAGCCAGAGT AGCGGCATTG TTGCGGATAA TGGTCAGGTT TACCTCAGCG GAATGCCTTT AGCGGGAAAA GTTCAGGTGA AATGGGGAGA AGAGGAAAAT GCTCACTGTG TCGCCAATTA TCAACTGCCA CCAGAGAGTC AGCAGCAGTT ATTAACCCAG CTATCAGCTG AATGTCGTTA A
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Protein sequence | MAGFFVRLFV ACAFAAQAPL SSAELYFNPR FLADDPQAVA DLSRFENGQE LPPGTYRVDI YLNNGYMATR DVTFNTGDSE QGIVPCLTRA QLASMGLNTA SVSGMNLLAD DACVPLTSMI HDATAQLDVG QQRLNLTIPQ AFMSNRARGY IPPELWDPGI NAGLLNYNFS GNSVQNRIGG NSHYAYLNLQ SGLNIGAWRL RDNTTWSYNS SDSSSGSKNK WQHINTWLER DIIPLRSRLT LGDGYTQGDI FDGINFRGAQ LASDDNMLPD SQRGFAPVIH GIARGTAQVT IKQNGYDIYN STVPPGPFTI NDIYAAGNSG DLQVTIKEAD GSTQIFTVPY SSVPLLQREG HTRYSITAGE YRSGNAQQEK PRFFQSTLLH GLPAGWTIYG GTQLADRYRA FNFGIGKNMG ALGALSVDMT QANSTLPDDS QHDGQSVRFL YNKSLNESGT NIQLVGYRYS TSGYFNFADT TYSRMNGYNI ETQDGVIQVK PKFTDYYNLA YNKRGKLQLT VTQQLGRSST LYLSGSHQTY WGTNNVDEQF QAGLNTAFED INWTLSYSLT KNAWQKGRDQ MLALNVNIPF SHWLRSDSKS QWRHASASYS MSHDLNGRMT NLAGVYGTLL EDNNLSYSVQ TGYAGGGDGN SGSTGYATLN YRGGYGNANI GYSHSDDIKQ LYYGVSGGVL AHANGVTLGQ PLNDTVVLVK APGAKDAKVE NQTGVRTDWR GYAVLPYATE YRENRVALDT NTLADNVDLD NSVANVVPTR GAIVRAEFKA RVGIKLLMTL THNNKPLPFG AMVTSESSQS SGIVADNGQV YLSGMPLAGK VQVKWGEEEN AHCVANYQLP PESQQQLLTQ LSAECR
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