Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4836 |
Symbol | nanC |
ID | 6144646 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 4943410 |
End bp | 4944126 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641619640 |
Product | N-acetylneuraminic acid porin NanC |
Protein accession | YP_001746747 |
Protein GI | 170681359 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGG CTAAAATACT TTCTGGCGTA TTATTACTGT GCTTTTCGTC ACCATTAATT TCTCAGGCTG CGACACTGGA CGTACGTGGT GGATATCGTA GCGGAAGCCA TGCCTATGAG ACTCGACTCA AAGTCAGTGA GGGATGGCAA AATGGATGGT GGGCAAGCAT GGAAAGTAAT ACCTGGAATA CCATTCATGA TAATAAAAAG GAAAATGCCG CACTCAATGA TGTTCAGGTT GAAGTTAATT ACGCGATTAA ACTTGATGAT CAATGGACGG TGCGCCCGGG AATGTTAACG CATTTTAGCA GCAACGGCAC ACGCTACGGA CCCTACGTAA AACTGTCCTG GGACGCGACA AAAGATCTTA ATTTTGGCAT TCGCTATCGT TACGACTGGA AAGCTTACCG ACAACAAGAC TTATCCGGTG ATATGTCTCG TGATAACGTT CATCGTTGGG ATGGATATGT CACTTACCAT ATTAATAGTG ATTTCACCTT CGCATGGCAA ACGACGCTAT ACAGCAAACA GAACGATTAT CGCTATGCAA ACCACAAGAA ATGGGCGACG GAAAATGCAT TTGTTCTACA ATACCATATG ACGCCCGATA TTACGCCATA CATAGAATAT GACTACCTTG ACCGCCAGGG TGTTTACAAC GGCAGAGATA ATTTATCGGA AAACAGTTAT CGCATTGGTG TGTCATTTAA ACTGTAG
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Protein sequence | MKKAKILSGV LLLCFSSPLI SQAATLDVRG GYRSGSHAYE TRLKVSEGWQ NGWWASMESN TWNTIHDNKK ENAALNDVQV EVNYAIKLDD QWTVRPGMLT HFSSNGTRYG PYVKLSWDAT KDLNFGIRYR YDWKAYRQQD LSGDMSRDNV HRWDGYVTYH INSDFTFAWQ TTLYSKQNDY RYANHKKWAT ENAFVLQYHM TPDITPYIEY DYLDRQGVYN GRDNLSENSY RIGVSFKL
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