Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4718 |
Symbol | nrdD |
ID | 6143559 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 4815742 |
End bp | 4817880 |
Gene Length | 2139 bp |
Protein Length | 712 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641619534 |
Product | anaerobic ribonucleoside triphosphate reductase |
Protein accession | YP_001746642 |
Protein GI | 170681280 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
TIGRFAM ID | [TIGR02487] anaerobic ribonucleoside-triphosphate reductase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACACCGC ATGTGATGAA ACGAGACGGC TGCAAAGTGC CGTTTAAATC AGAGCGCATC AAAGAAGCGA TTCTGCGTGC AGCTAAAGCA GCGGAAGTCG ATGATGCCGA TTATTGCGCC ACTGTTGCTG CGGTTGTCAG CGAGCAGATG CAGGGCCGCA ACCAGGTGGA TATCAATGAG ATCCAGACCG CAGTTGAAAA CCAGCTGATG TCGGGGCCAT ACAAACAACT GGCTCGTGCT TACATCGAGT ACCGTCACGA TCGCGACATT GAACGTGAAA AACGCGGTCG CCTGAACCAG GAGATCCGTG GTCTGGTCGA GCAGACCAAC TCCTCGTTAC TCAACGAAAA CGCCAACAAA GACAGCAAGG TGATTCCAAC CCAGCGCGAC CTGCTGGCCG GGATCGTGGC TAAACACTAT GCACGCCAGC ACTTGCTGCC GCGTGACGTG GTGCAGGCAC ATGAGCGTGG CGATATTCAC TATCACGATC TCGATTACTC GCCGTTCTTC CCGATGTTCA ACTGCATGTT GATCGACCTG AAAGGCATGC TGACCCAGGG CTTTAAGATG GGGAACGCCG AGATTGAACC GCCGAAGTCG ATCTCTACGG CAACCGCGGT AACTGCGCAG ATTATTGCTC AGGTCGCCAG CCATATTTAT GGCGGCACCA CCATTAACCG TATCGATGAA GTGCTGGCAC CGTTTGTCAC CGCCAGCTAC AACAAACATC GCAAGACCGC GGAAGAGTGG AACATCCCGG ACGCCGAAGG CTACGCTAAC TCTCGTACCA TCAAAGAGTG CTACGATGCC TTCCAGTCGC TGGAGTACGA AGTAAACACC CTGCATACCG CCAACGGTCA AACGCCGTTT GTAACCTTTG GTTTTGGTCT GGGCACCAGC TGGGAATCGC GCCTGATTCA GGAATCGATC CTGCGTAACC GTATCGCAGG CCTCGGTAAA AACCGTAAAA CGGCGGTGTT CCCGAAACTG GTGTTTGCGA TTCGCGATGG CCTGAACCAT AAAAAAGGCG ATCCGAACTA CGACATCAAA CAGCTGGCGC TGGAGTGCGC AAGCAAGCGC ATGTATCCGG ATATCCTGAA CTACGATCAG GTAGTGAAAG TCACCGGTTC GTTTAAAACC CCGATGGGCT GCCGCAGCTT CCTCGGCGTG TGGGAAAATG AAAACGGCGA GCAGATCCAC GATGGTCGTA ACAACCTCGG CGTGATCAGC CTGAACCTGC CGCGTATTGC TCTGGAGGCA AAAGGCGATG AAGCCACCTT CTGGAAGCTG CTGGATGAAC GTCTGGTGCT GGCACGTAAG GCGCTGATGA CCCGTATCGC TCGTCTCGAA GGCGTGAAAG CGCGCGTAGC CCCGATCCTC TATATGGAAG GTGCTTGTGG CGTGCGTCTG AATGCTGACG ATGATGTTTC TGAAATCTTC AAAAACGGTC GTGCGTCTAT TTCGCTGGGT TACATCGGCA TCCACGAAAC CATTAACGCG CTGTTTGGCG GCGAGCATGT GTATGACAAC GAGCAGCTGC GCGCGAAAGG TATCGCCATT GTTGAACGTC TGCGTCAGGC GGTGGATCAG TGGAAAGAAG AAACGGGTTA CGGTTTTAGC CTTTACAGCA CGCCAAGTGA AAACCTGTGC GACCGCTTCT GCCGTCTCGA TACCGCTGAG TTTGGCGTGG TGCCGGGCGT GACTGATAAA GGTTACTACA CCAACAGTTT CCACCTCGAT GTGGAGAAGA AGGTGAACCC GTACGACAAG ATCGACTTTG AAGCGCCTTA CCCGCCGCTG GCGAACGGTG GTTTCATTTG CTACGGCGAA TATCCAAACA TTCAGCACAA CCTGAAGGCG CTGGAAGATG TCTGGGATTA CAGCTATCAG CATGTACCGT ATTACGGCAC CAATACGCCG ATTGATGAGT GTTACGAGTG TGGTTTTACC GGTGAGTTTG AGTGCACCAG TAAAGGCTTC ACCTGCCCGA AATGTGGTAA CCATGACGCC TCCCGTGTGT CGGTGACTCG CCGCGTGTGC GGATATTTAG GTAGCCCGGA TGCGCGTCCG TTTAACGCTG GTAAGCAGGA AGAAGTTAAG CGCCGCGTTA AACATTTGGG GAATGGGCAG ATAGGTTAA
|
Protein sequence | MTPHVMKRDG CKVPFKSERI KEAILRAAKA AEVDDADYCA TVAAVVSEQM QGRNQVDINE IQTAVENQLM SGPYKQLARA YIEYRHDRDI EREKRGRLNQ EIRGLVEQTN SSLLNENANK DSKVIPTQRD LLAGIVAKHY ARQHLLPRDV VQAHERGDIH YHDLDYSPFF PMFNCMLIDL KGMLTQGFKM GNAEIEPPKS ISTATAVTAQ IIAQVASHIY GGTTINRIDE VLAPFVTASY NKHRKTAEEW NIPDAEGYAN SRTIKECYDA FQSLEYEVNT LHTANGQTPF VTFGFGLGTS WESRLIQESI LRNRIAGLGK NRKTAVFPKL VFAIRDGLNH KKGDPNYDIK QLALECASKR MYPDILNYDQ VVKVTGSFKT PMGCRSFLGV WENENGEQIH DGRNNLGVIS LNLPRIALEA KGDEATFWKL LDERLVLARK ALMTRIARLE GVKARVAPIL YMEGACGVRL NADDDVSEIF KNGRASISLG YIGIHETINA LFGGEHVYDN EQLRAKGIAI VERLRQAVDQ WKEETGYGFS LYSTPSENLC DRFCRLDTAE FGVVPGVTDK GYYTNSFHLD VEKKVNPYDK IDFEAPYPPL ANGGFICYGE YPNIQHNLKA LEDVWDYSYQ HVPYYGTNTP IDECYECGFT GEFECTSKGF TCPKCGNHDA SRVSVTRRVC GYLGSPDARP FNAGKQEEVK RRVKHLGNGQ IG
|
| |