Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4675 |
Symbol | |
ID | 6145560 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 4772475 |
End bp | 4773776 |
Gene Length | 1302 bp |
Protein Length | 433 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641619491 |
Product | TRAP transporter, DctM subunit |
Protein accession | YP_001746599 |
Protein GI | 170679845 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTACT GGTTACCGAT TATTGTGTTA TTTGGTGCCT TCTTTTTTAT GTTGGCATTA GGTGTACCTA TTGTTTATGC CATTGGTTTA TCCACACTGG CATCAATTTC CACACAACTC GATTTCAACT CAGCATTGAG TGTGGTTTCC CAAAAGTTAG CCTCCGGGTT AGATAGCTTT ACATTATTGG CAATTCCATT TTTTATTTTG TCTGGCAACA TTATGAATCA TGGAGGAATA GCGCGACGAT TAATCAACTT TGCCAGAATT CTTGGCGGTC GACTGCCTGG CTCACTTGCT CACTGTAATA TTCTTGCCAA TATGCTGTTC GGGGCAATTT CTGGTTCAGC TGTTGCTTCG GCGGCTGCGA TGGGCGGCGT CATGCATCCG CAACAGGTTA AAGAGGGCTA CGACCCGGCA TTCAGTACTG CGGTTAACGT TGCCTCTGCC CCGACGGGTT TGCTTATTCC ACCAAGTAAT ACGTTAATCG TCTATTCACT GGTCAGTGGT GGTACTTCTA TTGCCGCACT GTTCCTGGCG GGTTATGTTC CGGGAATTTT GCTGGGTCTG GCACTGATGG TAATAGCCGG TATTATCGCG GTACGTCGCG GTTATCCAAA GCCAGAACGC CCGACTTTAC GCCAGGCTGG CGTTGCGATA TGGATGGCTA TCCCCAGTAT TTTCCTGATT ATTTTAATTA TGGGGGGTGT ATTAAGTGGT ATTTTTACCC CGACAGAGGC CTCCGCAATT GCAGTAATTT ATACCCTTTT CCTTGCACTG GTTCTTTATC GTGAAATCTC AGTTAAAGAT TTACCTAAAA TATTTCTGGA ATCCGTTATT ACCACTGCAA TTGTCTTGTT ATTAATTGGT TCTTCGATGG GAATGTCATG GGCGATGTCA AACGCTGACG TTCCCTTCCT GATTCTCGAT TTGCTTAACA CTATTTCTGA CAACCCAATA ATAATCCTGC TTATTATCAA TATTATCCTG TTGATTATCG GCACTTTTAT GGATATGACA CCGGCGGTAC TGATTTTTAC GCCGATATTT TTACCGGTTG TCACCGAACT GGGCATGGAC CCGATTCACT TTGGTATTGT CATGGTACTG AACATGTGTA TCGGTATTTG TACTCCGCCT GTAGGCAGTG TGTTATTTGT CGGTTGTAGT GTATCTAAAT TACCGATTAA TAAAATTATC AAACCTATGC TGCCATTTTA TGCCGTGATG GTATTGGTGC TGGCAATGGT GACCTATATT CCGCAAATCA GTATGGCATT GCCAAGAGCA CTGGGTTACT GA
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Protein sequence | MDYWLPIIVL FGAFFFMLAL GVPIVYAIGL STLASISTQL DFNSALSVVS QKLASGLDSF TLLAIPFFIL SGNIMNHGGI ARRLINFARI LGGRLPGSLA HCNILANMLF GAISGSAVAS AAAMGGVMHP QQVKEGYDPA FSTAVNVASA PTGLLIPPSN TLIVYSLVSG GTSIAALFLA GYVPGILLGL ALMVIAGIIA VRRGYPKPER PTLRQAGVAI WMAIPSIFLI ILIMGGVLSG IFTPTEASAI AVIYTLFLAL VLYREISVKD LPKIFLESVI TTAIVLLLIG SSMGMSWAMS NADVPFLILD LLNTISDNPI IILLIINIIL LIIGTFMDMT PAVLIFTPIF LPVVTELGMD PIHFGIVMVL NMCIGICTPP VGSVLFVGCS VSKLPINKII KPMLPFYAVM VLVLAMVTYI PQISMALPRA LGY
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