Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4261 |
Symbol | |
ID | 6145764 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 4358995 |
End bp | 4360398 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641619082 |
Product | sugar (glycoside-Pentoside-hexuronide) transporter family protein |
Protein accession | YP_001746206 |
Protein GI | 170682275 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2211] Na+/melibiose symporter and related transporters |
TIGRFAM ID | [TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGACC ATAATCCACT GACATTAAGA CTGAATCTGC GGGAAAAAAT CGCCTATGGT ATGGGCGACG TCGGTTCGAA TTTAATGCTC TGCATCGGTA CTCTGTATCT CCTCAAATTT TATACCGATG AATTAGGGAT GCCTGCTTAC TATGGCGGGA TTATCTTTCT GGTGGCGAAG TTTTTTACCG CATTTACCGA TATGCTCACC GGATTTTTAC TCGACTCGCG GAAAAATATT GGGCCTAAAG GCAAATTTCG TCCCTTTATT TTATATGCAG CGGTTCCGGC GGCGTTAATT GCAACGCTCC AGTTTATCGC CACCACCTTT AGTTTGCCGG TTAAAACGAC GATTGCCACC GCACTGTTTA TGATGTTTGG ACTTTCATAC AGTCTGATGA ACTGCTCGTA TGGTGCGATG ATCCCGGCCA TTACCAAAAA CCCCAATGAG CGCGCGCAGC TCGCGGCTTA CCGCCAGGGT GGTGCAACCA TAGGGCTATT GATTTGTACC GTGGCGTTTA TTCCGTTGCA GTCGCTTTTT TCTGACTCAA CCGTCGGTTA TGCCTGTGCG GCACTGATGT TCTCCATTGG CGGCTTTATT TTTATGATGC TGTGCTACAG AGGCGTCAAA GAGCATTATG TGGACACCAC GCCAACCGGA CATAAGGCCA GTATTCTCAA ATCATTTTGC GCGATATTTC ATAATCCACC TTTGCTGGTA TTGTGCATTG CTAACCTGTG TACTCTGGCG GCATTTAATA TCAAACTGGC GATTCAGGTC TATTACACCC AGTATGTGCT GAATGATATT AATTTATTGT CGTGGATGGG ATTTTTCAGT ATGGGATGCA TCCTCGTCGG CGTATTACTG GTGCCATTAA CTGTAAAATG TTTTGGTAAA AAACAGGTTT ATTTAGCTGG CATGGTGCTA TGGGCGGTTG GTGATATCCT GAATTATTTC TGGGGAAGTA ACTCTTTCAC TTTCGTCATG TTCTCTTGTG TCGCCTTTTT TGGCACGGCC TTTGTAAACA GCCTGAACTG GGCACTGGTG CCAGATACCG TAGATTACGG TGAATGGAAA ACCGGTATAC GTGCCGAAGG TTCTGTTTAT ACCGGTTATA CCTTCTTTCG TAAAATTTCA GCCGCACTTG CTGGCTTCTT GCCAGGCATT ATGCTGACGC AAATCGGTTA TGTTCCCAAC ATCGCGCAAA GCGATGCGAC ATTACAGGGT TTGCGTCAGC TCATTTTTAT CTGGCCTTGT GCGCTGGCAA TGATTGCTGC ATTGACGATG GGGTTCTTTT ACACGCTCAA TGAGAAACGG TTTGCACTGA TTATTGAGGA AATTAACCAA CGCAAAAATA AAGAAATTGA GACAGAAGAA AAAACGGCTT CCGTAACGTT ATAA
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Protein sequence | MSDHNPLTLR LNLREKIAYG MGDVGSNLML CIGTLYLLKF YTDELGMPAY YGGIIFLVAK FFTAFTDMLT GFLLDSRKNI GPKGKFRPFI LYAAVPAALI ATLQFIATTF SLPVKTTIAT ALFMMFGLSY SLMNCSYGAM IPAITKNPNE RAQLAAYRQG GATIGLLICT VAFIPLQSLF SDSTVGYACA ALMFSIGGFI FMMLCYRGVK EHYVDTTPTG HKASILKSFC AIFHNPPLLV LCIANLCTLA AFNIKLAIQV YYTQYVLNDI NLLSWMGFFS MGCILVGVLL VPLTVKCFGK KQVYLAGMVL WAVGDILNYF WGSNSFTFVM FSCVAFFGTA FVNSLNWALV PDTVDYGEWK TGIRAEGSVY TGYTFFRKIS AALAGFLPGI MLTQIGYVPN IAQSDATLQG LRQLIFIWPC ALAMIAALTM GFFYTLNEKR FALIIEEINQ RKNKEIETEE KTASVTL
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