| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4224 |
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| Symbol | ubiD |
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| ID | 6146624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 4320224 |
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| End bp | 4321717 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641619047 |
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| Product | 3-octaprenyl-4-hydroxybenzoate decarboxylase |
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| Protein accession | YP_001746175 |
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| Protein GI | 170682759 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.514143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.00200609 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACGCCA TGAAATATAA CGATTTACGC GACTTCTTGA CGCTGCTTGA ACAGCAGGGT
GAGCTAAAAC GTATCACGCT CCCGGTGGAT CCGCATCTGG AAATCACTGA AATTGCTGAC
CGCACTTTGC GTGCCGGTGG GCCTGCGCTG TTGTTCGAAA ACCCTAAAGG CTACTCAATG
CCGGTGCTGT GCAACCTGTT CGGTACGCCA AAGCGCGTGG CGATGGGCAT GGGGCAGGAA
GATGTTTCGG CGCTGCGTGA AGTTGGTAAA TTATTGGCGT TTCTGAAAGA GCCGGAGCCG
CCAAAAGGTT TCCGCGACCT GTTTGATAAA CTGCCGCAGT TTAAGCAAGT ATTGAACATG
CCGACAAAGC GGCTGCGTGG TGCGCCTTGC CAACAAAAAA TCGTCTCTGG CGATGACGTC
GATCTCAATC GCATTCCCAT TATGACCTGC TGGCCGGAAG ATGCCGCGCC GCTGATTACC
TGGGGGCTGA CCGTGACGCG CGGCCCGCAT AAAGAGCGGC AGAATCTGGG CATTTATCGC
CAGCAGCTGA TTGGTAAAAA CAAACTGATT ATGCGCTGGC TGTCGCATCG CGGCGGCGCG
CTGGATTATC AGGAGTGGTG TGTGGCGCAT CCGGGCGAAC GTTTCCCGGT TTCTGTGGCG
CTGGGTGCCG ATCCCGCCAC GATTCTCGGT GCAGTCACCC CCGTTCCGGA TACGCTTTCA
GAGTATGCGT TTGCCGGATT GCTACGCGGC ACCAAAACCG AAGTAGTAAA GTGTATTTCC
AATGATCTCG AAGTGCCCGC CAGTGCGGAG ATTGTGCTGG AAGGGTATAT CGAACAAGGC
GAAACTGCGC CGGAAGGGCC GTATGGCGAC CACACCGGTT ACTATAACGA AGTCGATAGT
TTCCCGGTAT TTACCGTGAC GCATATTACC CAGCGTGAAG ATGCGATTTA TCATTCCACC
TATACCGGGC GTCCGCCGGA TGAACCTGCG GTGCTGGGTG TCGCACTGAA CGAAGTGTTT
GTGCCGATTC TGCAAAAACA GTTCCCGGAA ATTGTCGATT TTTACCTGCC GCCGGAAGGC
TGCTCTTATC GCCTGGCGGT AGTGACGATC AAAAAACAGT ACGCCGGACA CGCGAAGCGC
GTCATGATGG GCGTCTGGTC GTTCTTACGC CAGTTTATGT ACACTAAATT TGTGATCGTT
TGCGATGATG ACGTCAACGC ACGCGACTGG AACGATGTGA TTTGGGCGAT TACCACCCGT
ATGGACCCGG CGCGGGACAC GGTGTTGGTC GAAAATACGC CTATTGATTA TCTGGATTTT
GCCTCGCCTG TGTCCGGGCT GGGTTCAAAA ATGGGGCTGG ATGCCACGAA TAAATGGCCA
GGGGAAACCC AGCGTGAATG GGGACGTCCC ATCAAAAAAG ATCCGGATGT TGTCGCGCAT
ATTGACGCCA TCTGGGATGA ACTGGCTATT TTTAACAACG GTAAAAGCGC CTGA
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| Protein sequence | MDAMKYNDLR DFLTLLEQQG ELKRITLPVD PHLEITEIAD RTLRAGGPAL LFENPKGYSM
PVLCNLFGTP KRVAMGMGQE DVSALREVGK LLAFLKEPEP PKGFRDLFDK LPQFKQVLNM
PTKRLRGAPC QQKIVSGDDV DLNRIPIMTC WPEDAAPLIT WGLTVTRGPH KERQNLGIYR
QQLIGKNKLI MRWLSHRGGA LDYQEWCVAH PGERFPVSVA LGADPATILG AVTPVPDTLS
EYAFAGLLRG TKTEVVKCIS NDLEVPASAE IVLEGYIEQG ETAPEGPYGD HTGYYNEVDS
FPVFTVTHIT QREDAIYHST YTGRPPDEPA VLGVALNEVF VPILQKQFPE IVDFYLPPEG
CSYRLAVVTI KKQYAGHAKR VMMGVWSFLR QFMYTKFVIV CDDDVNARDW NDVIWAITTR
MDPARDTVLV ENTPIDYLDF ASPVSGLGSK MGLDATNKWP GETQREWGRP IKKDPDVVAH
IDAIWDELAI FNNGKSA
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