Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4191 |
Symbol | rhtB |
ID | 6147230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 4289750 |
End bp | 4290370 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641619014 |
Product | homoserine/homoserine lactone efflux protein |
Protein accession | YP_001746142 |
Protein GI | 170682422 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1280] Putative threonine efflux protein |
TIGRFAM ID | [TIGR00949] The Resistance to Homoserine/Threonine (RhtB) Family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.00349541 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCTTAG AATGGTGGTT TGCCTACCTG CTGACATCGA TCATTTTAAG CCTGTCGCCA GGCTCTGGCG CAATCAACAC CATGACCACC TCGCTCAACC ACGGTTATCG CGGCGCGGTG GCGTCTATTG CTGGGCTTCA GACCGGACTG GCGATTCATA TTGTGCTGGT TGGCGTGGGG TTGGGGACGC TATTTTCCCG CTCAGTGATT GCGTTTGAAG TGTTGAAGTG GGCAGGCGCA GCTTACTTGA TTTGGCTGGG AATACAGCAA TGGCGCGCCG CTGGTGCAAT TGACCTTAAA TCGCCAGCCT CTACTCAATC GCGCCGACAT TTGTTCCAGC GCGCAGTTTT TGTGAATCTT ACCAATCCCA AAAGTATTGT GTTTCTGGCG GCGCTATTTC CGCAATTCAT CATGCCGCAG CAGCCACAAC TGATGCAGTA TATCGTGCTC GGCGTCACCA CTATTGTGGT CGATATTATT GTGATGATCG GTTACGCCAC CCTTGCTCAA CGGATTGCTC TATGGATTAA AGGACCAAAG CAGATGAAGG CGCTGAATAA GATTTTCGGC TCGTTGTTTA TGCTGGTGGG AGCGCTGTTA GCATCGGCGA GGCATGCGTG A
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Protein sequence | MTLEWWFAYL LTSIILSLSP GSGAINTMTT SLNHGYRGAV ASIAGLQTGL AIHIVLVGVG LGTLFSRSVI AFEVLKWAGA AYLIWLGIQQ WRAAGAIDLK SPASTQSRRH LFQRAVFVNL TNPKSIVFLA ALFPQFIMPQ QPQLMQYIVL GVTTIVVDII VMIGYATLAQ RIALWIKGPK QMKALNKIFG SLFMLVGALL ASARHA
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