Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4186 |
Symbol | rarD |
ID | 6143328 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 4284607 |
End bp | 4285497 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641619009 |
Product | RarD protein |
Protein accession | YP_001746137 |
Protein GI | 170683494 |
COG category | [R] General function prediction only |
COG ID | [COG2962] Predicted permeases |
TIGRFAM ID | [TIGR00688] rarD protein |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.0171366 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGCAA AACAAACGCG GCAGGGCGTA TTACTCGCTC TTGCCGCTTA TTTTATTTGG GGTATTGCGC CAGCGTACTT CAAGCTGATT TACTACGTGC CCGCCGATGA GATCCTGACG CATCGCGTGA TCTGGTCGTT TTTCTTTATG GTGGTGCTGA TGAGCATTTG CCGCCAGTGG TCCTATTTAA AAACGCTGAT TCAGACGCCA CAGAAAATTT TTATGCTGGC AGTCTCTGCC GTGCTGATTG GTGGCAACTG GCTACTGTTT ATCTGGGCGG TGAACAATCA CCATATGCTG GAAGCGAGCC TTGGTTACTT TATTAACCCA CTGGTGAACA TTGTGCTGGG GATGATTTTC CTCGGCGAGC GATTCCGCCG GATGCAATGG CTGGCGGTGA TTCTGGCGAT ATGTGGCGTG TTGGTTCAGT TGTGGACTTT TGGTTCACTG CCGATTATCG CGCTGGGGCT GGCGTTTAGT TTTGCCTTCT ACGGCCTGGT ACGCAAGAAG ATTGCTGTTG AAGCGCAAAC CGGCATGTTA ATCGAAACTA TGTGGTTGCT GCCCGTGGCG GCGATTTACC TGTTTGCTAT TGCCGACAGC TCAACCAGCC ATATGGGGCA AAACCCGATG TCGCTGAATT TACTGCTGAT CGCCGCCGGT ATTGTCACTA CCGTACCGCT GTTGTGTTTT ACTGCGGCTG CGACACGCCT GCGTCTCTCA ACGTTAGGCT TTTTTCAGTA CATTGGCCCG ACGCTGATGT TCCTGCTGGC TGTGACGTTT TATGGTGAAA AACCGGGTGC CGATAAGATG GTAACCTTCG CCTTTATTTG GGTGGCGCTG GCAATTTTTG TGATGGATGC GATTTATACG CAGCGTAGAA CGTCCAAATA A
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Protein sequence | MDAKQTRQGV LLALAAYFIW GIAPAYFKLI YYVPADEILT HRVIWSFFFM VVLMSICRQW SYLKTLIQTP QKIFMLAVSA VLIGGNWLLF IWAVNNHHML EASLGYFINP LVNIVLGMIF LGERFRRMQW LAVILAICGV LVQLWTFGSL PIIALGLAFS FAFYGLVRKK IAVEAQTGML IETMWLLPVA AIYLFAIADS STSHMGQNPM SLNLLLIAAG IVTTVPLLCF TAAATRLRLS TLGFFQYIGP TLMFLLAVTF YGEKPGADKM VTFAFIWVAL AIFVMDAIYT QRRTSK
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