Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4131 |
Symbol | hdfR |
ID | 6143655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 4226916 |
End bp | 4227755 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641618954 |
Product | transcriptional regulator HdfR |
Protein accession | YP_001746086 |
Protein GI | 170682999 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.136622 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 0.368379 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGATACGG AATTGTTAAA AACTTTCCTG GAAGTTAGCC GAACGCGTCA CTTTGGTCGA GCGGCTGAAT CGCTCTATCT GACCCAATCA GCCGTGAGCT TTCGAATCAG ACAACTGGAA AATCAACTGG GTGTGAATCT TTTCACCCGC CACAGAAACA ATATCCGTTT AACCGCTGCC GGTGAAAAAC TACTGCCTTA TGCAGAAACG CTCATGAGCA CCTGGCAGGC CGCCCGTAAG GAGGTGGCGC ATACCTCACG ACATAACGAG TTTTCTATCG GTGCCAGCGC CTCATTGTGG GAATGTATGC TTAATCAGTG GCTGGGACGC TTGTATCAAA ATCAAGATGC CCATACAGGC TTACAGTTCG AAGCGCGAAT TGCCCAACGA CAGTCTCTGG TAAAACAGCT GCATGAACGC CAGCTTGATC TTCTTATTAC CACTGAAGCG CCCAAAATGG ACGAATTTAG TAGTCAGTTG CTGGGGTATT TCACTTTAGC GCTTTATACC AGTGCCCCTT CTAAACTAAA GGGAGATCTT AACTATCTGC GACTGGAGTG GGGGCCAGAT TTTCAACAGC ATGAGGCAGG TTTGATCGGT GCTGACGAAG TTCCCATTCT GACAACCAGT TCTGCTGAAC TGGCACAGCA ACAGATTGCG ATGCTTAATG GTTGCACCTG GCTACCCGTC AGTTGGGCGC GTAAAAAGGG CGGCCTGCAT ACCGTTGTCG ATAGCACAAC ACTTTCACGG CCGCTTTATG CCATATGGCT GCAAAATAGC GATAAAAATG CGTTGATTCG CGATCTATTG AAAATTAACG TGCTGGATGA AGTGTATTAA
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Protein sequence | MDTELLKTFL EVSRTRHFGR AAESLYLTQS AVSFRIRQLE NQLGVNLFTR HRNNIRLTAA GEKLLPYAET LMSTWQAARK EVAHTSRHNE FSIGASASLW ECMLNQWLGR LYQNQDAHTG LQFEARIAQR QSLVKQLHER QLDLLITTEA PKMDEFSSQL LGYFTLALYT SAPSKLKGDL NYLRLEWGPD FQQHEAGLIG ADEVPILTTS SAELAQQQIA MLNGCTWLPV SWARKKGGLH TVVDSTTLSR PLYAIWLQNS DKNALIRDLL KINVLDEVY
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