| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4108 |
|---|
| Symbol | gidB |
|---|
| ID | 6143014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 4202856 |
|---|
| End bp | 4203479 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641618932 |
|---|
| Product | 16S rRNA methyltransferase GidB |
|---|
| Protein accession | YP_001746070 |
|---|
| Protein GI | 170682169 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0357] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division |
|---|
| TIGRFAM ID | [TIGR00138] 16S rRNA methyltransferase GidB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000252823 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.110996 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTCAACA AACTCTCCTT ACTGCTGAAA GACGCAGGTA TTTCGCTTAC CGATCACCAG
AAAAACCAGC TTATTGCCTA CGTGAATATG CTGCATAAAT GGAATAAAGC GTACAACCTG
ACTTCGGTTC GCGATCCTAA TGAGATGCTG GTACGCCATA TTCTCGATAG CATTGTGGTA
GCTCCGTATC TGCAAGGTGA ACGGTTTATC GATGTCGGCA CCGGACCAGG ACTGCCTGGC
ATTCCACTCT CTATCGTGCG TCCTGAAGCC CACTTCACGT TGTTGGATAG CCTTGGTAAA
CGCGTGCGTT TCCTTCGTCA GGTGCAACAT GAGCTTAAAC TGGAGAATAT TGAGCCAGTA
CAGAGCAGGG TAGAAGAGTT TCCTTCTGAG CCGCCATTTG ATGGCGTAAT TAGCCGCGCT
TTTGCCTCTC TGAACGATAT GGTGAGCTGG TGCCACCATC TTCCTGGTGA GCAAGGTCGT
TTCTACGCGC TGAAAGGCCA AATGCCGGAA GATGAAATCG CTTTGTTGCC CGAAGAATAT
CAGGTCGAAT CAGTGGTTAA ACTTCACGTT CCGGCCCTGG ATGGCGAACG TCATCTGGTG
ATGATTAAAG CAAATAAAAT TTAA
|
|---|
| Protein sequence | MLNKLSLLLK DAGISLTDHQ KNQLIAYVNM LHKWNKAYNL TSVRDPNEML VRHILDSIVV
APYLQGERFI DVGTGPGLPG IPLSIVRPEA HFTLLDSLGK RVRFLRQVQH ELKLENIEPV
QSRVEEFPSE PPFDGVISRA FASLNDMVSW CHHLPGEQGR FYALKGQMPE DEIALLPEEY
QVESVVKLHV PALDGERHLV MIKANKI
|
|---|
| |