| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4095 |
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| Symbol | lpfB |
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| ID | 6143558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4189983 |
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| End bp | 4190714 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641618919 |
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| Product | long polar fimbrial operon protein LpfB |
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| Protein accession | YP_001746057 |
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| Protein GI | 170681205 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.124467 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCCAGAA AAAGTTGTTT AATCAGGCTC TTTAAAACAA CCGTTTCATG TAAGTTATTT
ACCGCGATTA TACTCAGTGT TTTTTTAGTC CAACCAGCAT TAACCTATGC AGGCGTTGTC
ATTGGTGGTA CACGGGTAGT TTACTTAAGT AATAACCCAG ATAAATCTAT TTCTGTATTT
AGCAAGGAAG AAAAAATTCC TTATCTCATC CAGGCATGGG TAGATCCGTT TAATAAAGAG
GATAAAAGCA AAGCACCGTT TACCGTTATT CCTCCGGTAT CACGATTAGA ACCCGCGCAA
GAAAAAGTAT TACGCATTAT TCATACCAAA GGTGTGTCAT TGCCTGATGA TCGCGAGTCA
GTCTTCTGGC TGAATATTAA AAATATTCCG CCCTCTGCGA GCAACAAAGC GGCGAACTCA
CTGGAAATCG CAGTTAAAAC GCGTATCAAG CTGTTCTGGC GACCGGCAAG CATTCGCCTG
ATTCCCGAAG ATGCTGCACC GAAGGTGAAG TGGCACCGGG AAGGGCGAAA CCTGATTGCA
GAGAATCCCA ACCCGATTCA TATCAGTGTG ATGGATGTCA TCGTTGATGG TCATGATGTG
CCCCTCAACA TGCTCCGTCC TTTTGAAACG CTCACGTTAC CTTTACCTGC TAATTCTGCG
GGAGGCCAAA TGATCTGGCG ATTTATTAAT GATTACGGCG CAGTCAGTGA CCCGATAAAA
ATGACGCTGT AA
|
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| Protein sequence | MSRKSCLIRL FKTTVSCKLF TAIILSVFLV QPALTYAGVV IGGTRVVYLS NNPDKSISVF
SKEEKIPYLI QAWVDPFNKE DKSKAPFTVI PPVSRLEPAQ EKVLRIIHTK GVSLPDDRES
VFWLNIKNIP PSASNKAANS LEIAVKTRIK LFWRPASIRL IPEDAAPKVK WHREGRNLIA
ENPNPIHISV MDVIVDGHDV PLNMLRPFET LTLPLPANSA GGQMIWRFIN DYGAVSDPIK
MTL
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