Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_3762 |
Symbol | nikC |
ID | 6146685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 3827930 |
End bp | 3828763 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641618588 |
Product | nickel transporter permease NikC |
Protein accession | YP_001745728 |
Protein GI | 170683465 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | [TIGR02790] nickel ABC transporter, permease subunit NikC |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 64 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACTTTT TCCTCTCCTC CCGCTGGTCG GTTCGCCTGG CGCTGATCAT TATCGCCCTG CTGGCACTGA TTGCGCTCAC CAGCCAGTGG TGGCTGCCGT ATGACCCACA GGCGATTGAT CTGCCGTCGC GCCTGCTTTC ACCGGATGCG CAGCACTGGC TGGGTACCGA TCATTTAGGG CGCGATATTT TCTCGCGGCT GATGGCGGCG ACCCGCGTGT CGCTCGGCTC GGTAATGGCC TGCCTGCTGC TGGTGCTGAC ATTAGGGCTG GTTATTGGCG GCAGCGCCGG ACTGATTGGC GGGCGCGTTG ATCAGGCCAC CATGCGCGTC GCGGATATGT TTATGACCTT CCCGACCTCG ATTCTGTCGT TCTTTATGGT TGGCGTGCTC GGCACCGGGC TGACCAACGT AATTATCGCC ATCGCCCTGT CGCACTGGGC GTGGTATGCA CGCATGGTGC GCAGCCTGGT GATTTCGCTA CGCCAGCGCG AGTTTGTACT GGCATCACGG CTTTCTGGCG CGGGCCATGT GCGAGTGTTT GTAGATCATC TGGCAGGTGC GGTGATCCCT TCGCTGCTGG TGCTGGCAAC GCTGGATATC GGCCATATGA TGCTACACGT CGCGGGGATG TCCTTCCTCG GCCTCGGCGT GACCGCGCCT ACCGCCGAAT GGGGCGTGAT GATTAACGAC GCGCGCCAGT ATATCTGGAC CCAGCCGCTG CAAATGTTCT GGCCGGGGCT GGCGCTGTTT ATCAGCGTGA TGGCCTTTAA CCTGGTGGGT GACGCACTGC GCGATCATCT GGACCCTCAT CTGGTGACGG AGCACGCACA CTAA
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Protein sequence | MNFFLSSRWS VRLALIIIAL LALIALTSQW WLPYDPQAID LPSRLLSPDA QHWLGTDHLG RDIFSRLMAA TRVSLGSVMA CLLLVLTLGL VIGGSAGLIG GRVDQATMRV ADMFMTFPTS ILSFFMVGVL GTGLTNVIIA IALSHWAWYA RMVRSLVISL RQREFVLASR LSGAGHVRVF VDHLAGAVIP SLLVLATLDI GHMMLHVAGM SFLGLGVTAP TAEWGVMIND ARQYIWTQPL QMFWPGLALF ISVMAFNLVG DALRDHLDPH LVTEHAH
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