| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3647 |
|---|
| Symbol | nirB |
|---|
| ID | 6146964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 3706140 |
|---|
| End bp | 3708683 |
|---|
| Gene Length | 2544 bp |
|---|
| Protein Length | 847 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641618474 |
|---|
| Product | nitrite reductase [NAD(P)H], large subunit |
|---|
| Protein accession | YP_001745614 |
|---|
| Protein GI | 170683252 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1251] NAD(P)H-nitrite reductase |
|---|
| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.000297498 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAG TCAGACTCGC AATTATCGGT AACGGTATGG TCGGCCATCG CTTTATCGAA
GATCTTCTTG ATAAATCTGA TGCGGCCAAC TTTGATATTA CCGTTTTCTG TGAAGAACCG
CGCATCGCTT ATGACCGCGT ACACCTCTCG TCTTACTTCT CTCACCACAC CGCCGAAGAG
CTGTCGCTGG TGCGCGAAGG CTTCTACGAG AAACACGGCA TCAAAGTTCT GGTCGGTGAA
CGCGCTATCA CCATCAACCG TCAGGAGAAG GTGATTCACT CCAGCGCCGG ACGTACCGTT
TTTTATGACA AGCTGATCAT GGCAACCGGT TCCTACCCGT GGATCCCGCC AATCAAAGGT
TCTGATACTC AGGACTGCTT TGTCTATCGC ACCATTGAAG ACCTCAACGC CATTGAATCC
TGTGCCCGTC GCAGCAAACG CGGTGCCGTT GTTGGTGGCG GCCTGTTAGG TCTGGAAGCC
GCTGGCGCGC TGAAAAACTT AGGTATTGAA ACCCACGTTA TCGAATTTGC CCCTATGCTG
ATGGCGGAAC AGCTTGATCA GATGGGTGGC GAGCAGCTGC GTCGCAAAAT CGAAAGTATG
GGCGTGCGCG TTCACACCAG CAAAAACACC CTTGAGATTG TGCAGGAAGG TGTCGAAGCG
CGTAAAACCA TGCGTTTTGC CGACGGTAGC GAGCTGGAAG TCGACTTTAT CGTCTTCTCA
ACCGGTATCC GTCCGCGCGA TAAGCTGGCA ACCCAGTGTG GTCTGGACGT TGCTCCGCGT
GGGGGTATTG TCATCAATGA TTCCTGCCAG ACTTCCGATC CGGATATCTA CGCCATCGGT
GAATGCGCAA GCTGGAACAA CCGTGTATTT GGTCTGGTAG CACCAGGCTA CAAAATGGCG
CAGGTCGCCG TTGACCATAT TCTTGGTAGC GAAAACGCCT TTGAAGGTGC TGACCTTAGC
GCTAAGCTGA AACTGCTGGG CGTAGACGTA GGCGGTATTG GTGATGCGCA TGGTCGCACG
CCTGGCGCAC GTAGCTACGT TTACCTCGAC GAAAGCAAAG AGATCTACAA ACGCCTGATT
GTCAGCGAAG ACAACAAAAC CCTGCTCGGT GCGGTACTGG TGGGCGATAC CAGCGACTAC
GGCAACCTGC TGCAACTGGT GCTGAACGCT ATCGAACTGC CGGAAAACCC GGATTCTCTG
ATTCTGCCGG CGCACTCAGG TAGCGGTAAG CCGTCTATCG GTGTTGATAA ACTGCCGGAC
AGCGCGCAAA TCTGCTCCTG CTTCGACGTC ACCAAAGGCG ATCTGATTGC AGCTATCAAC
AAAGGCTGCC ACACCGTTGC GGCGCTGAAA GCTGAAACCA AAGCGGGTAC TGGCTGCGGT
GGCTGTATCC CGCTGGTCAC TCAGGTACTG AACGCGGAAC TGGCGAAACA GGGCATCGAA
GTTAACAACA ACCTGTGCGA ACACTTTGCT TATTCGCGTC AGGAACTGTT CCATTTGATC
CGCGTTGAAG GCATTAAAAC CTTCGAAGAA CTGCTGGCGA AACACGGCAA AGGCTACGGT
TGTGAAGTTT GTAAACCGAC CGTCGGTTCG CTGCTGGCCT CCTGCTGGAA CGAATACATT
CTGAAGCCGG AACATACTCC GCTGCAGGAT TCAAACGACA ACTTCCTCGC TAACATCCAG
AAAGACGGCA CCTACTCGGT GATCCCGCGT TCTCCGGGCG GTGAAATCAC CCCGGAAGGG
CTGATGGCAG TAGGTCGTAT CGCGCGTGAA TTTAATCTCT ACACCAAAAT CACCGGCTCT
CAGCGCCTGG CGATGTTTGG CGCACAGAAA GACGATCTGC CGGAAATCTG GCGTCAGCTG
ATTGAAGCCG GCTTCGAAAC CGGTCATGCC TATGCGAAAG CACTGCGTAT GGCGAAAACC
TGCGTGGGTA GCACCTGGTG CCGCTACGGC GTTGGCGACA GCGTCGGCCT CGGCGTGGAA
CTGGAAAACC GCTACAAAGG CATCCGTACG CCGCACAAAA TGAAGTTCGG TGTCTCTGGC
TGTACCCGTG AATGTTCAGA AGCTCAGGGT AAAGACGTGG GTATCATCGC CACCGAAAAA
GGCTGGAACC TGTATGTTTG CGGTAACGGC GGCATGAAAC CGCGTCATGC GGATCTGCTG
GCAGCGGATA TCGATCGCGA AACGCTGATT AAATATCTTG ACCGCTTCAT GATGTTCTAC
ATCCGTACTG CCGACAAACT GACGCGTACC GCGCCGTGGT TAGAAAACCT CGAAGGTGGC
ATCGATTACC TGAAAGCGGT GATCATTGAC GACAAACTGG GGCTGAACGC ACATCTGGAA
GAAGAGATGG CGCGCCTGCG TGAAGCGGTA GTGTGTGAGT GGACTGAAAC GGTCAATACA
CCGTCCGCGC AGACTCGCTT CAAACACTTC ATCAACAGCG ACAAGCGTGA CCCGAACGTG
CAGATGGTGC CAGAGCGCGA ACAGCACCGT CCGGCAACGC CGTATGAACG TATCCCGGTA
ACTCTGGTGG AGGACAACGC ATGA
|
|---|
| Protein sequence | MSKVRLAIIG NGMVGHRFIE DLLDKSDAAN FDITVFCEEP RIAYDRVHLS SYFSHHTAEE
LSLVREGFYE KHGIKVLVGE RAITINRQEK VIHSSAGRTV FYDKLIMATG SYPWIPPIKG
SDTQDCFVYR TIEDLNAIES CARRSKRGAV VGGGLLGLEA AGALKNLGIE THVIEFAPML
MAEQLDQMGG EQLRRKIESM GVRVHTSKNT LEIVQEGVEA RKTMRFADGS ELEVDFIVFS
TGIRPRDKLA TQCGLDVAPR GGIVINDSCQ TSDPDIYAIG ECASWNNRVF GLVAPGYKMA
QVAVDHILGS ENAFEGADLS AKLKLLGVDV GGIGDAHGRT PGARSYVYLD ESKEIYKRLI
VSEDNKTLLG AVLVGDTSDY GNLLQLVLNA IELPENPDSL ILPAHSGSGK PSIGVDKLPD
SAQICSCFDV TKGDLIAAIN KGCHTVAALK AETKAGTGCG GCIPLVTQVL NAELAKQGIE
VNNNLCEHFA YSRQELFHLI RVEGIKTFEE LLAKHGKGYG CEVCKPTVGS LLASCWNEYI
LKPEHTPLQD SNDNFLANIQ KDGTYSVIPR SPGGEITPEG LMAVGRIARE FNLYTKITGS
QRLAMFGAQK DDLPEIWRQL IEAGFETGHA YAKALRMAKT CVGSTWCRYG VGDSVGLGVE
LENRYKGIRT PHKMKFGVSG CTRECSEAQG KDVGIIATEK GWNLYVCGNG GMKPRHADLL
AADIDRETLI KYLDRFMMFY IRTADKLTRT APWLENLEGG IDYLKAVIID DKLGLNAHLE
EEMARLREAV VCEWTETVNT PSAQTRFKHF INSDKRDPNV QMVPEREQHR PATPYERIPV
TLVEDNA
|
|---|
| |