| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3614 |
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| Symbol | rplD |
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| ID | 6145223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3678916 |
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| End bp | 3679521 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641618441 |
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| Product | 50S ribosomal protein L4 |
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| Protein accession | YP_001745581 |
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| Protein GI | 170679638 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0088] Ribosomal protein L4 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000161283 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.00352553 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGAATTAG TATTGAAAGA CGCGCAGAGC GCGCTGACTG TTTCCGAAAC TACCTTCGGT
CGTGATTTCA ACGAAGCGCT GGTTCACCAG GTTGTTGTTG CTTATGCAGC TGGTGCTCGT
CAGGGTACTC GTGCTCAGAA GACTCGTGCT GAAGTAACTG GTTCCGGTAA AAAACCGTGG
CGCCAGAAAG GCACCGGCCG TGCGCGTTCT GGTTCTATCA AGAGCCCGAT CTGGCGTTCT
GGTGGCGTGA CCTTTGCTGC TCGTCCGCAG GACCACAGTC AAAAAGTTAA CAAGAAGATG
TACCGCGGCG CGCTGAAAAG CATCCTGTCC GAACTGGTAC GTCAGGATCG TCTGATCGTT
GTCGAGAAGT TCTCTGTAGA AGCGCCGAAA ACTAAGCTGC TGGCACAGAA ACTGAAAGAC
ATGGCTCTGG AAGATGTGCT GATCATCACC GGTGAGCTGG ACGAAAACCT GTTCCTGGCT
GCGCGCAACC TGCACAAGGT TGACGTACGC GATGCAACTG GTATCGACCC GGTTAGCCTG
ATCGCCTTCG ACAAAGTCGT AATGACTGCT GATGCTGTTA AGCAAGTTGA GGAGATGCTG
GCATGA
|
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| Protein sequence | MELVLKDAQS ALTVSETTFG RDFNEALVHQ VVVAYAAGAR QGTRAQKTRA EVTGSGKKPW
RQKGTGRARS GSIKSPIWRS GGVTFAARPQ DHSQKVNKKM YRGALKSILS ELVRQDRLIV
VEKFSVEAPK TKLLAQKLKD MALEDVLIIT GELDENLFLA ARNLHKVDVR DATGIDPVSL
IAFDKVVMTA DAVKQVEEML A
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