| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3493 |
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| Symbol | kdsD |
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| ID | 6144035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3567879 |
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| End bp | 3568865 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641618322 |
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| Product | D-arabinose 5-phosphate isomerase |
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| Protein accession | YP_001745469 |
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| Protein GI | 170679857 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[T] Signal transduction mechanisms |
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| COG ID | [COG0794] Predicted sugar phosphate isomerase involved in capsule formation
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
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| TIGRFAM ID | [TIGR00393] KpsF/GutQ family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCACG TAGAGTTACA ACCGGGTTTT GACTTTCAGC AAGCAGGTAA AGAAGTCCTG
GCGATTGAAC GTGAATGCCT GGCGGAGCTT GATCAATACA TCAATCAGAA TTTCACGCTT
GCCTGTGAAA AGATGTTCTG GTGTAAAGGG AAAGTTGTCG TCATGGGGAT GGGGAAATCG
GGGCACATCG GGCGCAAAAT GGCGGCAACG TTTGCCAGCA CCGGTACACC TTCATTTTTC
GTCCATCCTG GTGAAGCCGC GCATGGTGAT TTAGGCATGG TCACCCCACA GGATGTGGTG
ATTGCTATCT CTAACTCAGG TGAATCCAGC GAAATCACGG CCTTAATTCC AGTGCTTAAG
CGTCTTCACG TACCGTTAAT CTGCATCACC GGTCGCCCGG AGAGCAGCAT GGCGCGCGCC
GCAGATGTGC ATCTGTGTGT TAAAGTAGCG AAAGAAGCCT GTCCGTTAGG GCTGGCACCG
ACCAGCAGCA CCACCGCCAC GCTGGTTATG GGCGATGCCC TCGCTGTCGC GCTGTTAAAA
GCACGCGGCT TTACTGCTGA AGATTTTGCG CTCTCACACC CAGGCGGCGC ACTGGGTCGT
AAACTTCTGC TGCGCGTAAA CGATATTATG CATACGGGCG ATGAGATCCC GCATGTTAAG
AAAACGGCCA GTCTGCGTGA CGCGTTGCTG GAAGTTACCC GCAAAAATCT TGGTATGACT
GTCATTTGCG ATGACAATAT GATGATTGAA GGCATCTTTA CCGACGGTGA TTTACGCCGT
GTCTTCGATA TGGGCGTGGA TGTTCGTCAG TTAAGTATTG CCGATGTGAT GACGCCGGGG
GGAATACGTG TGCGCCCTGG CATTCTGGCC GTTGAGGCAC TGAACTTAAT GCAGTCCCGC
CATATCACCT CCGTGATGGT TGCCGATGGC GACCATTTAC TCGGTGTGTT ACATATGCAT
GATTTACTGC GTGCAGGCGT AGTGTAA
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| Protein sequence | MSHVELQPGF DFQQAGKEVL AIERECLAEL DQYINQNFTL ACEKMFWCKG KVVVMGMGKS
GHIGRKMAAT FASTGTPSFF VHPGEAAHGD LGMVTPQDVV IAISNSGESS EITALIPVLK
RLHVPLICIT GRPESSMARA ADVHLCVKVA KEACPLGLAP TSSTTATLVM GDALAVALLK
ARGFTAEDFA LSHPGGALGR KLLLRVNDIM HTGDEIPHVK KTASLRDALL EVTRKNLGMT
VICDDNMMIE GIFTDGDLRR VFDMGVDVRQ LSIADVMTPG GIRVRPGILA VEALNLMQSR
HITSVMVADG DHLLGVLHMH DLLRAGVV
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