Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_3462 |
Symbol | truB |
ID | 6146044 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 3538589 |
End bp | 3539533 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641618291 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_001745440 |
Protein GI | 170680914 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 0.266438 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCGTC CTCGTCGTCG CGGTCGCGAC ATTAACGGCG TTTTGTTGCT GGATAAACCG CAGGGGATGT CCAGCAACGA TGCGCTGCAA AAAGTGAAAC GGATTTATAA CGCCAACCGT GCCGGGCATA CCGGTGCGCT GGACCCGCTG GCGACCGGCA TGTTGCCGAT TTGCCTCGGG GAAGCGACGA AGTTTTCCCA GTATCTGCTG GACTCCGACA AACGCTATCG GGTCATTGCG CGTCTTGGAC AGCGTACCGA TACGTCTGAT GCCGACGGAC AAATCGTTGA AGAACGTCCG GTAACCTTTA GTGCAGAGCA ACTGGCGGCG GCACTGGATA CTTTCCGTGG CGATATCGAA CAGATCCCTT CGATGTATTC AGCACTGAAA TACCAGGGCA AAAAACTGTA CGAATATGCG CGTCAGGGCA TTGAAGTTCC GCGTGAAGCG CGCCCGATTA CCGTTTATGA ATTGCTGTTT ATTCGCCACG AAGGCAATGA GCTGGAGCTG GAAATTCACT GCTCAAAAGG CACTTATATC CGCACCATCA TTGATGACCT GGGTGAAAAA CTCGGTTGTG GCGCGCATGT TATTTACCTG CGTCGTCTGG CGGTAAGTAA ATATCCGGTT GAACGGATGG TGACCCTGGA ACATCTGCGT GAACTGGTTG AACAAGCCGA ACAGCAGGAT ATTCCAGCCG CGGAGTTACT TGATCCATTA CTGATGCCAA TGGACAGTCC AGCTTCGGAC TACCCGGTGG TGAATCTTCC GTTAACGTCT TCTGTTTACT TCAAAAATGG TAACCCGGTT CGTACATCCG GTGCGCCGCT GGAAGGACTG GTTCGCGTTA CAGAAGGTGA GAACGGCAAG TTTATCGGTA TGGGCGAAAT TGACGATGAA GGCCGCGTCG CGCCTCGTCG CCTGGTGGTT GAATACCCGG CGTAA
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Protein sequence | MSRPRRRGRD INGVLLLDKP QGMSSNDALQ KVKRIYNANR AGHTGALDPL ATGMLPICLG EATKFSQYLL DSDKRYRVIA RLGQRTDTSD ADGQIVEERP VTFSAEQLAA ALDTFRGDIE QIPSMYSALK YQGKKLYEYA RQGIEVPREA RPITVYELLF IRHEGNELEL EIHCSKGTYI RTIIDDLGEK LGCGAHVIYL RRLAVSKYPV ERMVTLEHLR ELVEQAEQQD IPAAELLDPL LMPMDSPASD YPVVNLPLTS SVYFKNGNPV RTSGAPLEGL VRVTEGENGK FIGMGEIDDE GRVAPRRLVV EYPA
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