| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3460 |
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| Symbol | pnp |
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| ID | 6146841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3535789 |
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| End bp | 3537924 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641618289 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001745438 |
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| Protein GI | 170682265 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.234004 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTTAATC CGATCGTTCG TAAATTCCAG TACGGCCAAC ACACCGTGAC TCTGGAAACC
GGCATGATGG CTCGTCAGGC TACTGCCGCT GTTATGGTTA GCATGGATGA CACCGCGGTA
TTCGTTACCG TTGTTGGCCA GAAAAAAGCC AAACCAGGTC AGGACTTCTT CCCACTGACC
GTTAACTATC AGGAGCGTAC CTACGCTGCT GGTCGTATCC CGGGTAGCTT CTTCCGTCGT
GAAGGCCGCC CAAGCGAAGG CGAAACCCTG ATCGCGCGTC TGATTGACCG CCCGATTCGC
CCGCTGTTCC CGGAAGGCTT CGTCAACGAA GTTCAGGTTA TCGCCACCGT GGTTTCTGTT
AACCCGCAAG TTAACCCGGA TATCGTCGCG ATGATTGGTG CTTCCGCAGC ACTGTCTCTG
TCTGGTATTC CGTTCAATGG TCCGATTGGT GCTGCCCGCG TAGGTTACAT CAATGACCAG
TACGTACTGA ACCCGACTCA GGACGAGCTG AAAGAGAGCA AACTGGATCT GGTTGTTGCG
GGTACTGAAG CCGCTGTACT GATGGTTGAA TCTGAAGCTG AACTGCTGAG CGAAGACCAG
ATGTTGGGCG CAGTAGTGTT TGGTCATGAA CAACAGCAGG TTGTCATTCA GAACATCAAT
GAACTGGTGA AAGAAGCCGG TAAACCGCGT TGGGACTGGC AGCCGGAGCC GGTAAACGAA
GCGCTGAACG CGCGCGTTGC TGCACTGGCT GAAGCTCGTC TGAGCGATGC TTACCGCATC
ACCGACAAAC AAGAGCGTTA TGCGCAGGTT GATGTCATCA AATCTGAAAC CATCGCGACG
CTGCTTGCTG AAGATGAAAC CCTGGACGAA AACGAACTGG GTGAAATTCT GCACGCTATC
GAGAAAAACG TTGTTCGTAG CCGCGTACTG GCAGGCGAAC CGCGTATCGA CGGTCGTGAA
AAAGATATGA TTCGTGGTCT GGATGTGCGT ACTGGCGTGC TGCCGCGTAC TCACGGTTCT
GCGCTGTTCA CCCGTGGTGA AACTCAGGCG CTGGTTACCG CAACGCTGGG TACTGCACGT
GACGCGCAGG TTCTTGATGA ACTGATGGGC GAACGTACTG ACACCTTCCT GTTCCACTAC
AACTTCCCTC CGTACTCCGT AGGCGAAACC GGCATGGTCG GTTCTCCGAA GCGTCGTGAA
ATTGGTCACG GTCGTCTGGC GAAGCGCGGC GTGCTGGCAG TCATGCCGGA TATGGACAAA
TTCCCGTACA CCGTACGTGT GGTGTCTGAA ATCACCGAAT CCAACGGTTC TTCTTCTATG
GCTTCCGTGT GCGGCGCGTC TCTGGCGCTG ATGGACGCAG GTGTGCCAAT CAAAGCTGCC
GTTGCGGGTA TCGCAATGGG TCTGGTGAAA GAAGGCGACA ACTACGTTGT ACTGTCTGAC
ATTTTGGGCG ACGAAGATCA CCTGGGCGAT ATGGACTTCA AAGTTGCGGG TTCCCGCGAC
GGTATCTCTG CATTGCAGAT GGATATCAAA ATTGAAGGTA TCACCAAAGA GATCATGCAG
GTTGCACTGA ACCAAGCTAA AGGTGCGCGT CTGCATATCC TGGGCGTAAT GGAACAGGCG
ATCAACGCGC CGCGCGGCGA TATCTCTGAG TTCGCTCCGC GTATCCATAC CATCAAGATC
AACCCGGACA AGATCAAAGA CGTTATCGGT AAAGGCGGTT CTGTTATCCG TGCTCTGACC
GAAGAAACTG GCACCACCAT CGAAATCGAA GATGACGGTA CTGTGAAAAT CGCAGCGACC
GACGGCGAGA AAGCGAAACA TGCTATTCGT CGTATCGAAG AGATCACAGC AGAAATCGAA
GTGGGCCGCG TCTACAATGG TAAAGTGACC CGTATCGTTG ACTTTGGCGC ATTTGTTGCC
ATCGGCGGCG GTAAAGAAGG TCTGGTACAC ATCTCTCAGA TCGCTGACAA ACGCGTTGAG
AAAGTGACCG ATTACCTGCA GATGGGTCAG GAAGTACCGG TGAAAGTTCT GGAAGTTGAT
CGCCAGGGCC GTATCCGTCT GAGCATTAAA GAAGCGACTG AGCAGTCTCA ACCTGCTGCA
GCACCGGAAG CTCCGGCTGC TGAACAGGGC GAGTAA
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| Protein sequence | MLNPIVRKFQ YGQHTVTLET GMMARQATAA VMVSMDDTAV FVTVVGQKKA KPGQDFFPLT
VNYQERTYAA GRIPGSFFRR EGRPSEGETL IARLIDRPIR PLFPEGFVNE VQVIATVVSV
NPQVNPDIVA MIGASAALSL SGIPFNGPIG AARVGYINDQ YVLNPTQDEL KESKLDLVVA
GTEAAVLMVE SEAELLSEDQ MLGAVVFGHE QQQVVIQNIN ELVKEAGKPR WDWQPEPVNE
ALNARVAALA EARLSDAYRI TDKQERYAQV DVIKSETIAT LLAEDETLDE NELGEILHAI
EKNVVRSRVL AGEPRIDGRE KDMIRGLDVR TGVLPRTHGS ALFTRGETQA LVTATLGTAR
DAQVLDELMG ERTDTFLFHY NFPPYSVGET GMVGSPKRRE IGHGRLAKRG VLAVMPDMDK
FPYTVRVVSE ITESNGSSSM ASVCGASLAL MDAGVPIKAA VAGIAMGLVK EGDNYVVLSD
ILGDEDHLGD MDFKVAGSRD GISALQMDIK IEGITKEIMQ VALNQAKGAR LHILGVMEQA
INAPRGDISE FAPRIHTIKI NPDKIKDVIG KGGSVIRALT EETGTTIEIE DDGTVKIAAT
DGEKAKHAIR RIEEITAEIE VGRVYNGKVT RIVDFGAFVA IGGGKEGLVH ISQIADKRVE
KVTDYLQMGQ EVPVKVLEVD RQGRIRLSIK EATEQSQPAA APEAPAAEQG E
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