| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3458 |
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| Symbol | deaD |
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| ID | 6143001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3532727 |
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| End bp | 3534616 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641618287 |
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| Product | ATP-dependent RNA helicase DeaD |
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| Protein accession | YP_001745436 |
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| Protein GI | 170684314 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 0.438364 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAAT TCGAAACCAC TTTTGCAGAT CTGGGCCTGA AGGCTCCTAT CCTTGAAGCC
CTTAACGATC TGGGTTACGA AAAACCATCT CCAATTCAGG CAGAGTGTAT TCCACATCTG
CTGAATGGCC GCGACGTTCT GGGTATGGCC CAGACGGGGA GCGGAAAAAC TGCAGCATTC
TCTTTACCTC TGCTGCAGAA TCTTGATCCT GAGCTGAAAG CACCACAGAT TCTGGTGCTG
GCACCGACCC GCGAACTGGC GGTACAGGTT GCTGAGGCAA TGACGGATTT CTCTAAACAC
ATGCGCGGCG TAAACGTGGT TGCCCTGTAC GGCGGCCAGC GTTATGACGT GCAATTACGT
GCCCTGCGTC AGGGGCCGCA GATCGTTGTC GGTACTCCGG GCCGTCTGCT GGATCACCTG
AAACGTGGCA CTCTGGACCT TTCTAAACTG AGCGGTCTGG TTCTGGATGA AGCTGACGAA
ATGCTGCGCA TGGGCTTCAT CGAAGACGTT GAAACTATTA TGGCGCAGAT CCCGGAAGGT
CATCAGACCG CTCTGTTCTC TGCAACCATG CCGGAAGCGA TTCGTCGCAT TACCCGCCGC
TTTATGAAAG AGCCGCAGGA AGTGCGCATT CAGTCCAGCG TGACTACCCG TCCTGACATC
AGCCAGAGCT ACTGGACTGT CTGGGGTATG CGTAAAAACG AAGCACTGGT ACGTTTCCTG
GAAGCGGAAG ATTTTGATGC GGCGATTATC TTCGTTCGTA CCAAAAACGC GACTCTGGAA
GTGGCAGAAG CCCTTGAGCG TAACGGCTAC AACAGCGCCG CGCTGAACGG TGACATGAAC
CAGGCGCTGC GTGAGCAGAC ACTGGAACGA CTGAAAGATG GTCGTCTGGA CATCCTGATT
GCGACCGACG TTGCGGCCCG TGGCCTGGAC GTTGAGCGTA TCAGCCTGGT AGTTAACTAC
GATATCCCGA TGGATTCTGA GTCTTACGTT CACCGTATCG GTCGTACTGG TCGTGCGGGC
CGTGCTGGCC GTGCGCTGCT GTTCGTTGAG AACCGTGAGC GTCGTCTGCT GCGTAACATT
GAACGCACCA TGAAGCTGAC CATTCCGGAA GTTGAACTGC CGAACGCAGA ACTGCTGGGC
AAACGTCGTC TGGAAAAATT CGCCGCTAAA GTACAGCAGC AGCTGGAAAG CAGCGATCTG
GATCAATACC GTGCACTGCT GAGCAAAATT CAGCCGACGG CAGAAGGTGA AGAGCTGGAT
CTCGAAACTC TGGCCGCCGC ACTGCTGAAA ATGGCACAGG GTGAACGTAC TCTGATTGTT
CCGCCAGATG CGCCGATGCG TCCGAAACGT GAATTCCGTG ACCGTGATGA CCGTGGTCCG
CGCGATCGTA ACGACCGTGG CCCGCGTGGT GACCGTGAAG ATCGTCCGCG TCGTGAACGT
CGTGATGTTG GCGATATGCA GCTGTACCGC ATTGAAGTGG GCCGCGATGA TGGTGTTGAA
GTTCGTCATA TCGTTGGTGC GATTGCTAAC GAAGGCGACA TCAGCAGCCG TTACATCGGT
AACATCAAGC TGTTTGCTTC TCACTCCACC ATCGAACTGC CGAAAGGTAT GCCGGGTGAA
GTGCTGCAAC ACTTTACGCG TACTCGCATT CTCAACAAGC CGATGAATAT GCAGTTACTG
GGCGATGCAC AGCCGCATAC TGGCGGTGAG CGTCGTGGCG GTGGTCGTGG TTTCGGTGGC
GAACGTCGTG AAGGCGGTCG TAACTTCAGC GGTGAACGCC GTGAAGGTGG CCGTGGTGAT
GGTCGTCGTT TTAGCGGCGA ACGTCGTGAA GGCCGCGCAC CGCGTCGTGA TGACTCTACC
GGTCGTCGTC GTTTCGGTGG CGATGCGTAA
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| Protein sequence | MAEFETTFAD LGLKAPILEA LNDLGYEKPS PIQAECIPHL LNGRDVLGMA QTGSGKTAAF
SLPLLQNLDP ELKAPQILVL APTRELAVQV AEAMTDFSKH MRGVNVVALY GGQRYDVQLR
ALRQGPQIVV GTPGRLLDHL KRGTLDLSKL SGLVLDEADE MLRMGFIEDV ETIMAQIPEG
HQTALFSATM PEAIRRITRR FMKEPQEVRI QSSVTTRPDI SQSYWTVWGM RKNEALVRFL
EAEDFDAAII FVRTKNATLE VAEALERNGY NSAALNGDMN QALREQTLER LKDGRLDILI
ATDVAARGLD VERISLVVNY DIPMDSESYV HRIGRTGRAG RAGRALLFVE NRERRLLRNI
ERTMKLTIPE VELPNAELLG KRRLEKFAAK VQQQLESSDL DQYRALLSKI QPTAEGEELD
LETLAAALLK MAQGERTLIV PPDAPMRPKR EFRDRDDRGP RDRNDRGPRG DREDRPRRER
RDVGDMQLYR IEVGRDDGVE VRHIVGAIAN EGDISSRYIG NIKLFASHST IELPKGMPGE
VLQHFTRTRI LNKPMNMQLL GDAQPHTGGE RRGGGRGFGG ERREGGRNFS GERREGGRGD
GRRFSGERRE GRAPRRDDST GRRRFGGDA
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