| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3438 |
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| Symbol | agaC |
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| ID | 6147501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3516826 |
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| End bp | 3517629 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641618267 |
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| Product | PTS system N-acetylgalactosamine-specific transporter subunit IIC |
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| Protein accession | YP_001745416 |
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| Protein GI | 170681846 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3715] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC |
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| TIGRFAM ID | [TIGR00822] PTS system, mannose/fructose/sorbose family, IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGAAA TAACCCTACT CCAGGGATTA TCCCTGGCGG CGTTAGTTTT CTTTCTGGGG
ATTGATTTTT GGCTGGAAGC CTTATTTTTA TTCCGCCCGA TAATCGTTTG TACCCTTACA
GGTGCTATTC TCGGTGATAT TCAGACTGGC TTAATTACCG GTGGCCTGAC AGAGTTGGCT
TTCGCCGGAT TAACCCCTGC AGGTGGTGTT CAGCCGCCCA ACCCTATTAT GGCGGGTCTG
ATGACCACTG TCATTGCATG GTCTACGGGC GTTGATGCCA AAACGGCAAT TGGTCTTGGC
CTGCCGTTTA GTTTGTTAAT GCAGTACGTC ATTCTGTTCT TCTATTCCGC TTTCTCATTA
TTTATGACCA AAGCCGATAA ATGCGCAAAA GAGGCGGATA CGGCAGCATT TTCCCGACTT
AACTGGACAA CGATGCTCAT CGTCGCTTCA GCGTATGCGG TGATTGCTTT CCTCTGTACT
TACCTGGCAC AAGGGGCGAT GCAGGCGCTG GTGAAAGCGA TGCCCGCCTG GCTGACCCAC
GGCTTTGAAG TGGCTGGCGG TATTCTGCCT GCCGTTGGTT TTGGCTTGCT GCTGCGCGTG
ATGTTCAAAG CGCAATATAT CCCTTACCTG ATCGCCGGTT TCCTGTTCGT TTGCTACATC
CAGGTCAGCA ACCTGTTGCC GGTTGCCGTG CTGGGCGCAG GCTTTGCGGT GTATGAGTTT
TTCAATGCGA AATCCCGGCA GCAAGCGCAA CCGCAGCCCG TTGCCAGTAA AAATGAAGAA
GAGGACTACA GCAATGGGAT CTGA
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| Protein sequence | MHEITLLQGL SLAALVFFLG IDFWLEALFL FRPIIVCTLT GAILGDIQTG LITGGLTELA
FAGLTPAGGV QPPNPIMAGL MTTVIAWSTG VDAKTAIGLG LPFSLLMQYV ILFFYSAFSL
FMTKADKCAK EADTAAFSRL NWTTMLIVAS AYAVIAFLCT YLAQGAMQAL VKAMPAWLTH
GFEVAGGILP AVGFGLLLRV MFKAQYIPYL IAGFLFVCYI QVSNLLPVAV LGAGFAVYEF
FNAKSRQQAQ PQPVASKNEE EDYSNGI
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