Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_3113 |
Symbol | rafR |
ID | 6143982 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 3198745 |
End bp | 3199755 |
Gene Length | 1011 bp |
Protein Length | 336 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641617980 |
Product | HTH-type transcriptional regulator RafR |
Protein accession | YP_001745130 |
Protein GI | 170682779 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.021598 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACTTA AGGCGATTGC CACTGCACTC GGAGTTTCTG TCACCACTGT CAGTCGGGCT CTTGGAGGCT ATGCAGATGT GTCAGCTTCC ACCCGTGCAC GGGTGGAAGC TGAAGCTCGT CGACGCGGTT ACCGTCCTAA TACTCAGGCA AGAAGACTCA AAACCGGTAA AACCGATGCT GTCGGTCTGG TTTATCCTGG ACGTGATGTG CCATTTAACA GTGGTGTTTT TATGGATATG GTCAGTTGCA TCAGCCGGGA ACTTGCTCAC CATGATATTG ACTTACTACT GATAGCTGAT GATGAGCATG CCGATTGCCA CAGCTATATG CGGCTTGTTG AAAGTCGCAG GGTTGATGCT CTCATCATTG CACACACTCT GGATGACGAT CCCCGTATCA CACACCTTCA TAAAGCAGGT ATTCCATTTC TGGCTCTTGG TCGGGTACCA TCTGGTCTGC CCTGTGCGTG GTTTGACTTT GATAATCATG CCGGGACTGG ACAGGCAACC CAGAAACTGA TTGCTTTGGG ACATAAACGT ATTGCATTGT TGAGTGAAGA CACTTCACAT AGCTATGTTG TTGCAAGACG TCAGGGATGG CTTGATGCAC TGAATGAGCA TGAACTGGAA GATACATGGC TGCGGCTGGT TTCTCCCACA CGGCGAGCAG GATATCAGGC CGTGATGGAG TTAATGTCAC TACCGATACC ACCAACAGCT ATTATTACTG ACAATGACCT GAGTGGAGAT GGTGCTGCCA TGGCACTGCA GTTGAGCGGT CGTCTTTCAG GAAAAGATGC GGTATCTCTG GTTGTATATG ATGGTTTGCC ACAGGACAGT ATTATTGAGC TGGATGTGGC TGCAGTTATT CAGTCAACAC GAAGCCTCGT TGGTCGCCAG ATTTCCGAGA TGATATATCA GATAATTACT GATTCATCAT CAAAACCACT ACAGGTTGTC TGGAACCCGG TATTTTATCC GGGAAAGACG ATTCATCCTC CTTGCTCCTG A
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Protein sequence | MSLKAIATAL GVSVTTVSRA LGGYADVSAS TRARVEAEAR RRGYRPNTQA RRLKTGKTDA VGLVYPGRDV PFNSGVFMDM VSCISRELAH HDIDLLLIAD DEHADCHSYM RLVESRRVDA LIIAHTLDDD PRITHLHKAG IPFLALGRVP SGLPCAWFDF DNHAGTGQAT QKLIALGHKR IALLSEDTSH SYVVARRQGW LDALNEHELE DTWLRLVSPT RRAGYQAVME LMSLPIPPTA IITDNDLSGD GAAMALQLSG RLSGKDAVSL VVYDGLPQDS IIELDVAAVI QSTRSLVGRQ ISEMIYQIIT DSSSKPLQVV WNPVFYPGKT IHPPCS
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