| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3093 |
|---|
| Symbol | |
|---|
| ID | 6144562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 3181991 |
|---|
| End bp | 3182695 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641617961 |
|---|
| Product | alanine racemase |
|---|
| Protein accession | YP_001745112 |
|---|
| Protein GI | 170683383 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
|---|
| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0000310002 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACGATA TTGCGCATAA CCTGGCACAG GTCCGGGACA AAATCTCAGC GGCTGCAACG
CGTTGCGGCC GTTCTCCAGA AGAAATTACG CTGCTTGCAG TCAGTAAAAC AAAACCTGCG
AGCGCCATCG CAGAAGCCAT TGATGCCGGG CAGCGTCAAT TTGGTGAAAA CTACGTTCAG
GAAGGGGTAG ATAAAATTCG CCACTTTCAG GAACTGGGCG TAACAGGATT AGAATGGCAT
TTTATTGGCC CGTTGCAGTC TAATAAAAGC CGCCTGGTGG CAGAGCATTT CGACTGGTGT
CATACCATCG ACCGTTTGCG CATCGCTACC CGCCTCAATG ACCAGCGCCC GGCAGAACTT
CCCCCTCTTA ACGTTCTGAT TCAAATTAAC ATTAGTGATG AAAACAGTAA GTCCGGGATT
CAACTGGCTG AACTGGACGA GCTGGCAGCG GCGGTCGCTG AACTACCGCG TTTACGTCTG
CGCGGGCTGA TGGCAATCCC TGCGCCTGAG TCAGAATATG TAAGGCAGTT TGAAGTTGCA
CGCCAAATGG CTGTAGCATT TGCCGGACTG AAAACGCGCT ACCCGCATAT CGACACGCTC
TCTCTTGGAA TGTCGGACGA TATGGAAGCC GCCATTGCGG CAGGTAGCAC GATGGTTCGT
ATCGGCACTG CAATTTTTGG TGCGCGTGAT TACTCTAAAA AATAA
|
|---|
| Protein sequence | MNDIAHNLAQ VRDKISAAAT RCGRSPEEIT LLAVSKTKPA SAIAEAIDAG QRQFGENYVQ
EGVDKIRHFQ ELGVTGLEWH FIGPLQSNKS RLVAEHFDWC HTIDRLRIAT RLNDQRPAEL
PPLNVLIQIN ISDENSKSGI QLAELDELAA AVAELPRLRL RGLMAIPAPE SEYVRQFEVA
RQMAVAFAGL KTRYPHIDTL SLGMSDDMEA AIAAGSTMVR IGTAIFGARD YSKK
|
|---|
| |