Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_2866 |
Symbol | rpoS |
ID | 6147499 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 2939757 |
End bp | 2940749 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641617735 |
Product | RNA polymerase sigma factor RpoS |
Protein accession | YP_001744890 |
Protein GI | 170684160 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCAGA ATACGCTGAA AGTTCATGAT TTAAATGAAG ATGCGGAATT TGATGAGAAC GGAGTTGAGG TTTTTGACGA AAAGGCCTTA GTAGAAGAGG AACCCAGTGA TAACGATTTG GCCGAAGAGG AACTGTTATC GCAGGGAGCC ACACAGCGTG TGCTGGACGC GACTCAGCTT TACCTTGGTG AGATTGGTTA TTCACCACTG TTAACGGCCG AAGAAGAAGT TTATTTTGCG CGTCGCGCAC TGCGTGGAGA TGTTGCCTCT CGCCGCCGGA TGATCGAGAG TAACTTGCGT CTGGTGGTAA AAATTGCCCG CCGTTATGGC AATCGTGGTC TGGCGTTGCT GGACCTGATC GAAGAGGGCA ACCTGGGGCT GATCCGCGCG GTAGAGAAGT TTGACCCGGA ACGTGGTTTC CGCTTCTCAA CATACGCAAC CTGGTGGATT CGCCAGACGA TCGAACGGGC GATTATGAAC CAAACCCGTA CTATTCGTTT GCCGATTCAC ATCGTAAAGG AGCTGAACGT TTACCTGCGA ACCGCACGCG AGTTGTCCCA TAAACTGGAC CATGAACCAA GTGCGGAAGA GATCGCAGAG CAACTGGATA AGCCAGTTGA TGACGTCAGC CGTATGCTTC GTCTTAACGA GCGCATTACC TCGGTAGACA CCCCGCTGGG TGGTGATTCC GAAAAAGCGT TGCTGGACAT CCTGGCCGAT GAAAAAGAGA ACGGTCCGGA AGATACCACG CAAGATGACG ATATGAAGCA GAGCATCGTC AAATGGCTGT TCGAGCTGAA CGCCAAACAG CGTGAAGTGC TGGCACGTCG ATTCGGTTTG CTGGGGTACG AAGCGGCAAC ACTGGAAGAT GTAGGTCGTG AAATTGGCCT CACCCGTGAA CGTGTTCGCC AGATTCAGGT TGAAGGCCTG CGCCGTTTGC GCGAAATCCT GCAAACGCAG GGGCTGAATA TCGAAGCGCT GTTCCGCGAA TAA
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Protein sequence | MSQNTLKVHD LNEDAEFDEN GVEVFDEKAL VEEEPSDNDL AEEELLSQGA TQRVLDATQL YLGEIGYSPL LTAEEEVYFA RRALRGDVAS RRRMIESNLR LVVKIARRYG NRGLALLDLI EEGNLGLIRA VEKFDPERGF RFSTYATWWI RQTIERAIMN QTRTIRLPIH IVKELNVYLR TARELSHKLD HEPSAEEIAE QLDKPVDDVS RMLRLNERIT SVDTPLGGDS EKALLDILAD EKENGPEDTT QDDDMKQSIV KWLFELNAKQ REVLARRFGL LGYEAATLED VGREIGLTRE RVRQIQVEGL RRLREILQTQ GLNIEALFRE
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