| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2671 |
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| Symbol | pbpC |
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| ID | 6144527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 2740971 |
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| End bp | 2743283 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641617542 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_001744707 |
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| Protein GI | 170683227 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.122147 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTCGCT TGTTAACCAA ACGCGGCTGC TGGATAACGC TGGCAGCTGC GCCATTTCTC
CTTTTTCTTG CAGCGTGGGG AGCAGATAAA CTCTGGCCTC TACCGCTGCA TGAAGTCAAT
CCCGCACGAG TGGTTGTGGC GCAGGATGGG ACGCCGCTCT GGCGCTTTGC CGATGCGGAA
GGCATCTGGC GTTATCCGGT AACAATCGAA GATGTTTCTC CACGTTACCT TGAAGCGCTG
ATCAATTATG AAGATCGCTG GTTCTGGAAG CATCCGGGGG TGAATCCATT CTCGGTGGCG
CGCGCAGCAT GGCAAGATCT CACTTCGGGA AGGGTTATTT CCGGTGGCAG CACGCTCACT
ATGCAGGTTG CTCGTCTGCT TGATCCTCAC CCCAAAACAT TTGGCGGCAA AATTCGCCAG
CTCTGGCGCG CGTTGCAACT GGAGTGGCAT CTGTCTAAGC GTGAAATTCT GACCTTGTAT
CTTAACCGCG CTCCGTTTGG CGGTACGTTG CAGGGGATCG GTGCGGCAAG TTGGGCTTAT
CTCGGAAAAT CGCCTGCGAA TTTAAGCTAT TCCGAGGCGG CAATGCTGGC GGTGTTGCCG
CAAGCGCCCA GCCGACTGCG CCCGGATCGC TGGCCGGAAC GTGCCGAAGC CGCGCGTAAT
AAAGTGCTCG AAAGGATGGC CGTGCAAGGT GTGTGGTCCC GTGAGCAGGT AAAAGAGTCA
AGGGAAGAAC CCATCTGGCT GGCACCCCGA CAAATGCCGC AACTGGCACC GCTGTTTTCG
CGCATGATGC TCGGTAAAAG CAAAAGCGAC AAAATCGTTA CGACGCTGGA TGCCGGTCTT
CAACGACGTC TGGAAGAACT GGCGCAAAAC TGGAAAGGAC GATTACCACC GCGCAGCTCA
CTGGCGATGA TCGTGGTTGA TCATACCGAT ATGCGTGTTC GCGGCTGGGT GGGTTCGGTT
GATCTCAACG ATGATTCACG CTTTGGTCAT GTTGATATGG TCAATGCGAT CCGATCGCCA
GGATCGGTGC TCAAACCGTT TGTTTATGGT CTGGCGCTGG ATGAAGGCTT GATCCACCCG
GCATCGCTGT TGCAAGACGT CCCCCGACGC ACCGGTGATT ACCGACCTGG CAACTTTGAC
AGCGGTTTTC ATGGCCCGAT CAGCATGAGT GAGGCGCTGG TGCGATCGCT GAACTTACCT
GCTGTGCAGG TGCTGGAAGC CTATGGACCG AAACGGTTTG CGGCAAAGTT ACGCAATGTT
GGATTGCCGT TATATTTGCC CAACGGTGCT GCACCGAATC TTTCGCTCAT TCTCGGCGGC
GCTGGCGCAA AACTGGAAGA TATGGCGGCA GCGTATACCG CGTTTGCTCG CCACGGCAAG
GCAGGCAAAT TGCGCTTACA GCCTGACGAT CCGCTGCTTG AACGGCCTTT AATGTCGTCG
GGGGCTGCGT GGATCATTCG CCGGATTATG GCTGATGAAG CGCAACCCTT GCCGGATGGT
GCCTTGCCGC GCGTCGCCCC ACTGGCATGG AAAACGGGCA CCAGCTATGG CTATCGTGAT
GCCTGGGCGA TTGGGGTTAA CGCTCGCTAT GTCATTGGGA TCTGGACTGG CAGACCGGAC
GGCACGCCCG TTGTTGGTCA GTTTGGCTTT GCCAGCGCCG TACCATTGTT GAATCAGGTC
AATAATATCT TACTGTCGCG CAGTGCGAAT CTGCCGGAAG ACCCACGTCC TGACTCTGTA
AGTCGTGGCG TTATCTGCTG GCCGGGCGGA CAGTCTTTGC CGGAAGGTGA CAGTAACTGT
CGCCGCCGCC TGGCAACCTG GCTGCTGGAC GGGAGTCAGC CGCCAACTCT ATTACTGCCG
GAGCAGGAAG GCATTAATGG CATTCGTTTC CCCATCTGGC TGGATGAAAA CGGCAAACGT
GTTGCCGCTG ATTGCCCTCA GGCGCGACAA GAAATGATAA ATGTCTGGCC GCTACCGCTG
GAACCCTGGC TGCCCGCATC AGAACGTCGC GCTGTGCGCT TGCCACCGGC CTCGACAATT
TGCCCGCCAT ACGGTCACGA TGCACAACTC CCGCTGCAGC TAACAGGTGT GCGCGATGGC
GCGATTATTA AACGTTTACC GGGCGCAGCG GAAGCGACTT TGCCGTTACA ATCAAGTGGA
GGGGCAGGTG AACGCTGGTG GTTTCTGAAC GGCGAACCGT TAACTGAACG TGGGCGCAAC
GTGACCCTGC ATTTGACGGA TAAAGGCGAT TATCAATTGC TGGTGATGGA TGAGGTGGGG
CAAATAGCGA CAGTGAAATT TGTCATGCAA TAG
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| Protein sequence | MPRLLTKRGC WITLAAAPFL LFLAAWGADK LWPLPLHEVN PARVVVAQDG TPLWRFADAE
GIWRYPVTIE DVSPRYLEAL INYEDRWFWK HPGVNPFSVA RAAWQDLTSG RVISGGSTLT
MQVARLLDPH PKTFGGKIRQ LWRALQLEWH LSKREILTLY LNRAPFGGTL QGIGAASWAY
LGKSPANLSY SEAAMLAVLP QAPSRLRPDR WPERAEAARN KVLERMAVQG VWSREQVKES
REEPIWLAPR QMPQLAPLFS RMMLGKSKSD KIVTTLDAGL QRRLEELAQN WKGRLPPRSS
LAMIVVDHTD MRVRGWVGSV DLNDDSRFGH VDMVNAIRSP GSVLKPFVYG LALDEGLIHP
ASLLQDVPRR TGDYRPGNFD SGFHGPISMS EALVRSLNLP AVQVLEAYGP KRFAAKLRNV
GLPLYLPNGA APNLSLILGG AGAKLEDMAA AYTAFARHGK AGKLRLQPDD PLLERPLMSS
GAAWIIRRIM ADEAQPLPDG ALPRVAPLAW KTGTSYGYRD AWAIGVNARY VIGIWTGRPD
GTPVVGQFGF ASAVPLLNQV NNILLSRSAN LPEDPRPDSV SRGVICWPGG QSLPEGDSNC
RRRLATWLLD GSQPPTLLLP EQEGINGIRF PIWLDENGKR VAADCPQARQ EMINVWPLPL
EPWLPASERR AVRLPPASTI CPPYGHDAQL PLQLTGVRDG AIIKRLPGAA EATLPLQSSG
GAGERWWFLN GEPLTERGRN VTLHLTDKGD YQLLVMDEVG QIATVKFVMQ
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