| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2638 |
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| Symbol | hyfR |
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| ID | 6145879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 2696228 |
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| End bp | 2698240 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641617509 |
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| Product | hydrogenase-4 transcriptional regulator |
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| Protein accession | YP_001744674 |
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| Protein GI | 170683782 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTATGT CAGACGAGGC GATGTTTGCC CCGCCGCAAG GAATAACAAT TGAAGCGGTA
AACGGAATGC TCGCGGAGCG GTTAGCGCAG AAACACGGCA AGGCGTCTTT ATTACGCGCC
TTCATCCCGC TGCCGCCGCC GTTCAGCCCG GTACAACTTA TTGAACTGCA TGTTCTCAAA
AGCAACTTCT ATTACCGCTA CCATGATGAT GGCAGCGATG TGACGGCAAC AACAAAGTAT
CAGGGTGAGA TGGTCGATTA TTCGCGCCAC GCCGTCCTTC TCGGCAGTAG TGGAATGGCG
GAGCTACGCT TTATTCGCAC CCACGGCAGT CGTTTTACTC CCCAGGATTG CACACTGTTT
AACTGGCTGG CACACATAAT CACTCCGGTT CTGCAATCAT GGCTCAATGA TGAAGAACAG
CAGGTGGCGC TGCGTTTGCT GGAGAAAGAT CGCGATCATC ATCGGGTACT GGTGGATATC
ACTAATGCAG TGTTGTCACA TCTTGATCTC GACAATCTGA TCGCTGACGT CGCTCGTGAG
ATCCATCATT TTTTCGGTCT GGCTTCAGTC AGTATGGTAC TGGGCGATCA TCGAAAGAAC
GAGAAGTTCA GCCTGTGGTG CAGCGATCTT TCTGCCTCAC ATTGTGCGTG TCTGCCACGC
AATATGGCTG GCGACAGTGT ATTGCTGACA CAAACGCTAC AAACCCGACA ACCGACCTTG
ACGCACCGTG CAGACGATCT GTTTCTCTGG CAACGCGACC CGTTATTACA CTTACTTGCA
TCTAACGGCT GCGAATCTGC GCTCCTTATA CCGCTCACCT TTGGCAACCA TACACCGGGT
GCATTGTTGC TGGCGCATAC CTCTTCCACT CTCTTTAGTG AGGAAAACTG CCAGCTACTA
CAACATATTG CCGATCGCAT CGCTATTGCC GTTGGCAATG CCGATGCCTG GCGCAGCATG
ACCGATTTGC AGGAAAGCTT GCAGCAAGAA AACCACCAGC TTAGCGAGCA GCTCCTTTCG
AATCTGGGCG TCGGTGACAT TATCTATCAA AGCCAGGCAA TGGAAGACCT GCTCCAGCAG
GTAGATATTG TGGCGAAGAG CGACAGTACG GTGTTGATTT GTGGTGAAAC CGGAACCGGC
AAAGAGGTGA TCGCCAGAGC GATCCATCAA CTTAGCCCAC GACGCGACAA GCCACTGGTC
AAAATCAACT GCGCTGCCAT CCCCGCCAGT CTTCTGGAAA GTGAGTTATT CGGTCATGAC
AAAGGGGCAT TTACTGGTGC GATTAATACC CATCGTGGTC GTTTTGAAAT TGCCGATGGC
GGCACGTTGT TTCTCGATGA AATTGGCGAT CTGCCGTTAG AACTTCAGCC TAAACTGCTG
CGCGTATTGC AGGAACGGGA GATTGAGCGT CTCGGCGGGA GTAGAACGAT CCCGGTAAAT
GTCAGAGTCA TTGCCGCCAC CAACCGTGAT TTGTGGCAAA TGGTTGAAGA TCGCCAGTTT
CGCAGCGATC TCTTTTATCG CCTGAATGTC TTCCCACTGG AACTGCCGCC ACTGCGCGAC
CGTCCGGAAG ATATCCCTCT TTTAGCAAAG CATTTCACGC AAAAAATGGC GCGCCATATG
AATCGCGCAA TTGACGCCAT CCCGACCGAG GCGCTACGCC AGTTGATGTC GTGGGACTGG
CCGGGCAACG TGCGCGAGCT GGAAAACGTG ATTGAGCGAG CGGTACTACT GACTCGCGGT
AACAGTCTGA ATTTACATCT TAATGTCCGA CAAAGCCGTT TACTGCCGAC GCTAAATGAA
GATTCAGCGC TTCGCAGTTC AATGGCGCAG TTGCTGCACC CGACGACGCC AGAGAATGAC
GAAGAAGAAC GTCAGCGCAT TGTTCAGGTA TTGCGAGAAA CCAATGGCAT TGTTGCCGGG
CCCCGTGGCG CGGCGACACG ATTAGGGATG AAGCGCACCA CGCTGCTGTC ACGAATGCAG
CGTCTGGGGA TCTCGGTTCG CGAGGTGTTG TAA
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| Protein sequence | MAMSDEAMFA PPQGITIEAV NGMLAERLAQ KHGKASLLRA FIPLPPPFSP VQLIELHVLK
SNFYYRYHDD GSDVTATTKY QGEMVDYSRH AVLLGSSGMA ELRFIRTHGS RFTPQDCTLF
NWLAHIITPV LQSWLNDEEQ QVALRLLEKD RDHHRVLVDI TNAVLSHLDL DNLIADVARE
IHHFFGLASV SMVLGDHRKN EKFSLWCSDL SASHCACLPR NMAGDSVLLT QTLQTRQPTL
THRADDLFLW QRDPLLHLLA SNGCESALLI PLTFGNHTPG ALLLAHTSST LFSEENCQLL
QHIADRIAIA VGNADAWRSM TDLQESLQQE NHQLSEQLLS NLGVGDIIYQ SQAMEDLLQQ
VDIVAKSDST VLICGETGTG KEVIARAIHQ LSPRRDKPLV KINCAAIPAS LLESELFGHD
KGAFTGAINT HRGRFEIADG GTLFLDEIGD LPLELQPKLL RVLQEREIER LGGSRTIPVN
VRVIAATNRD LWQMVEDRQF RSDLFYRLNV FPLELPPLRD RPEDIPLLAK HFTQKMARHM
NRAIDAIPTE ALRQLMSWDW PGNVRELENV IERAVLLTRG NSLNLHLNVR QSRLLPTLNE
DSALRSSMAQ LLHPTTPEND EEERQRIVQV LRETNGIVAG PRGAATRLGM KRTTLLSRMQ
RLGISVREVL
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