| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2419 |
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| Symbol | menD |
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| ID | 6144159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 2466968 |
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| End bp | 2468638 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641617292 |
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| Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
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| Protein accession | YP_001744464 |
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| Protein GI | 170683335 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
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| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0945731 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 64 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGTAA GCGCATTTAA CCGACGCTGG GCGGCGGTCA TTCTGGAAGC ATTAACGCGT
CAAGGCGTCA GACACATCTG TATCGCCCCT GGCTCGCGTT CTACACCGTT AACGTTAGCG
GCGGCGGAGA ATTCCGCATT CATTCACCAC ACCCATTTCG ATGAGCGTGG ACTGGGGCAT
CTGGCGCTGG GGCTGGCGAA AGTCAGCAAG CAGCCGGTGG CGGTGATTGT GACCTCCGGC
ACGGCGGTAG CAAATCTCTA TCCGGCACTG ATTGAAGCCG GGTTAACCGG AGAAAAACTG
ATCCTGTTAA CCGCCGATCG CCCGCCGGAG CTCATTGACT GCGGCGCGAA TCAGGCAATT
CGTCAGCCGG GAATGTTCGC CTCTCACCCC ACGCACAGTA TTTCACTGCC GCGCCCGACC
CAGGATATCC CCGCACGTTG GCTGGTTTCT ACCATCGACC ATGCTCTCGG TACGCTTCAT
GCGGGCGGAG TCCATATCAA CTGCCCGTTT GCTGAACCGC TGTATGGCGA AATGGACGAC
ACCGGGCTTA GCTGGCAACA GCGTCTGGGC GACTGGTGGC AGGACGATAA GCCGTGGCTG
CGTGAAGCGC CTCGTCTGGA AAGTGAAAAA CAGCGCGACT GGTTCTTCTG GCGACAAAAG
CGCGGCGTGG TGGTTGCCGG GCGCATGAGT GCGGAAGAGG GCAAAAAAGT CGCACTGTGG
GCGCAAACTC TTGGCTGGCC GCTGATTGGC GATGTGCTGT CGCAAACCGG ACAGCCGCTG
CCGTGTGCCG ATCTCTGGTT AGGCAATGCC AAAGCGACCA GCGAACTGCA ACAGGCGCAA
ATTGTGGTGC AACTGGGAAG CAGCCTGACG GGCAAACGGC TCCTGCAATG GCAGGCAAGC
TGTGAACCCG AAGAGTACTG GATTGTTGAT GACATTGAAG GGCGACTTGA TCCGGCACAC
CATCGCGGAC GTCGCTTAAT TGCCAATATT GCCGACTGGC TGGAGCAACA TCCGGCAGAA
AAACGCCAGC CCTGGTGCGT TGAAATCCCG CGCCTGGCGG AACAGGCAAT GCAGGCGGTT
ATTGCCCGTC GCGATGCGTT TGGCGAAGCC CAACTGGCGC ATCGCATCAG CGACTATCTG
CCTGAACAGG GGCAATTGTT TGTCGGTAAC AGCCTGGTAG TACGTCTGAT TGATGCGCTT
TCGCAACTTC CGGCAGGTTA CCCGGTGTAC AGCAACCGAG GTGCCAGCGG TATCGACGGG
CTGCTCTCGA CCGCCGCTGG CGTTCAGCGG GCCAGTGGCA AACCGACGCT GGCGATTGTG
GGCGATCTCT CAGCACTTTA CGATCTCAAC GCGCTGGCGT TATTACGTCA GGTTTCCGCG
CCGCTGGTAT TAATTGTGGT GAACAACAAT GGCGGGCAAA TTTTCTCGCT GTTGCCAACG
CCGAAAAACG AGCGCGAGCG TTTCTATCTG ATGCCGCAAA ACGTCCATTT TGAGCACGCC
GCCGCGATGT TCGAGCTGAA ATATCATCGT CCGCAAAACT GGCAGGAACT TGAAACGGCA
CTTGTCGACG CCTGGCGCAC GCCGACCACC ACGGTAATTG AAATGGTGGT TAACGACACC
GATGGTGCGC AAACCCTCCA GCAACTGCTG GCGCAGGTAA GCCATTTATG A
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| Protein sequence | MSVSAFNRRW AAVILEALTR QGVRHICIAP GSRSTPLTLA AAENSAFIHH THFDERGLGH
LALGLAKVSK QPVAVIVTSG TAVANLYPAL IEAGLTGEKL ILLTADRPPE LIDCGANQAI
RQPGMFASHP THSISLPRPT QDIPARWLVS TIDHALGTLH AGGVHINCPF AEPLYGEMDD
TGLSWQQRLG DWWQDDKPWL REAPRLESEK QRDWFFWRQK RGVVVAGRMS AEEGKKVALW
AQTLGWPLIG DVLSQTGQPL PCADLWLGNA KATSELQQAQ IVVQLGSSLT GKRLLQWQAS
CEPEEYWIVD DIEGRLDPAH HRGRRLIANI ADWLEQHPAE KRQPWCVEIP RLAEQAMQAV
IARRDAFGEA QLAHRISDYL PEQGQLFVGN SLVVRLIDAL SQLPAGYPVY SNRGASGIDG
LLSTAAGVQR ASGKPTLAIV GDLSALYDLN ALALLRQVSA PLVLIVVNNN GGQIFSLLPT
PKNERERFYL MPQNVHFEHA AAMFELKYHR PQNWQELETA LVDAWRTPTT TVIEMVVNDT
DGAQTLQQLL AQVSHL
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