| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2344 |
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| Symbol | ccmF |
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| ID | 6143358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 2377246 |
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| End bp | 2379189 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641617217 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_001744389 |
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| Protein GI | 170679920 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.756913 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCCGG AAATTGGTAA CGGGCTGCTG TGTCTGGCGC TAGGAATTGC GCTGCTGCTG
TCCGTGTATC CGCTATGGGG CGTAGCGCGC GGAGATGCGC GCATGATGGC ATCTTCCCGC
TTGTTTGCCT GGCTGCTGTT TATGTCTGTG GCTGGCGCAT TTCTGGTACT GGTCAATGCC
TTCGTGGTCA ACGACTTCAC CGTCACCTAT GTTGCCAGCA ACTCCAATAC CCAGCTTCCG
GTGTGGTATC GCGTGGCGGC CACCTGGGGC GCGCATGAAG GCTCGCTCCT GCTGTGGGTG
CTGCTGATGA GCGGCTGGAC CTTTGCGGTA GCGATTTTTA GTCAGCGTAT TCCGCTGGAT
ATTGTGGCCC GCGTACTGGC GATAATGGGG ATGGTCAGCG TCGGCTTTTT GCTGTTCATT
CTCTTTACCT CTAACCCGTT CTCACGCACG TTGCCGAACT TCCCGATTGA AGGTCGCGAT
CTTAACCCGC TGTTACAGGA TCCGGGGCTG ATCTTCCATC CGCCTCTGCT TTATATGGGG
TACGTCGGCT TCTCGGTGGC GTTTGCTTTT GCCATTGCTT CTTTGTTGAG CGGGCGTCTG
GACAGCACTT ATGCGCGTTT TACTCGTCCG TGGACGCTGG CGGCGTGGAT CTTCTTGACG
CTCGGCATTG TGCTCGGTTC CGCATGGGCC TATTACGAAC TCGGCTGGGG CGGCTGGTGG
TTCTGGGATC CGGTAGAAAA CGCCTCGTTT ATGCCGTGGC TGGTGGGGAC TGCGCTGATG
CACTCACTGG CGGTCACTGA ACAACGCGCC AGCTTCAAAG CGTGGACATT ACTGCTGGCA
ATCAGTGCCT TCTCGTTGTG TCTGCTGGGG ACTTTCCTGG TGCGTTCCGG CGTGCTGGTA
TCGGTACACG CGTTTGCCTC TGATCCGGCA CGCGGTATGT TTATCCTCGC CTTTATGGTA
CTGGTGATTG GTGGTTCGCT GCTGCTGTTT GCCGCGCGTG GACACAAAGT TCGCTCACGC
GTAAACAATG CGCTGTGGTC GCGGGAATCT CTGCTGTTAG CGAACAACGT TTTGCTGGTC
GCCGCGATGC TGGTGGTGTT GCTGGGGACG CTGCTGCCGC TGGTGCACAA GCAACTGGGA
CTGGGCAGTA TTTCGATTGG CGAACCGTTC TTCAACACCA TGTTTACCTG GCTGATGGTG
CCGTTTGCGC TGCTGCTTGG TGTCGGTCCT CTGGTGCGCT GGGGGCGCGA TCGCCCACGT
AAAATCCGCA ATTTGTTGAT TATCGCCTTC ATCTCTACGC TGGTGCTGTC GCTGCTGTTG
CCGTGGCTGT TCGAAAGCAA AGTGGTGGCG ATGACGGTGC TCGGCCTGGC AATGGCCTGC
TGGATTGCGG TGCTGGCAAT TGCGGAAGCT GCGCTGCGTA TTTCACGCGG CACGAAAACC
ACCTTCAGTT ATTGGGGAAT GGTGGCGGCT CACCTGGGGC TGGCAGTGAC AATTGTTGGT
ATTGCCTTTA GCCAGAACTA TAGCGTTGAG CGTGATGTGC GCATGAAGTC CGGCGATAGT
GTCGATATCC ATGAATATCG CTTCACCTTC CGTGATGTCA AAGAGGTGAC TGGCCCGAAC
TGGCGTGGCG GTGTGGCGAC TATCGGCGTA ACGCGCGATG GCAAGCCGGA AACGGTGCTG
TATGCGGAAA AACGTTATTA CAACACTGCC GGGTCGATGA TGACCGAAGC GGCGATTGAC
GGCGGCATCA CGCGTGACCT GTACGCCGCG CTCGGTGAAG AGCTGGAAAA CGGCGCGTGG
GCCGTGCGTC TTTACTACAA ACCGTTTGTT CGCTGGATTT GGGCGGGCGG GCTGATGATG
GCGTTGGGCG GACTGCTGTG TCTGTTTGAT CCTCGCTATC GTAAGCGCGT GAGTCCGCAA
AAAACTGCGC CGGAGGCTGT ATGA
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| Protein sequence | MMPEIGNGLL CLALGIALLL SVYPLWGVAR GDARMMASSR LFAWLLFMSV AGAFLVLVNA
FVVNDFTVTY VASNSNTQLP VWYRVAATWG AHEGSLLLWV LLMSGWTFAV AIFSQRIPLD
IVARVLAIMG MVSVGFLLFI LFTSNPFSRT LPNFPIEGRD LNPLLQDPGL IFHPPLLYMG
YVGFSVAFAF AIASLLSGRL DSTYARFTRP WTLAAWIFLT LGIVLGSAWA YYELGWGGWW
FWDPVENASF MPWLVGTALM HSLAVTEQRA SFKAWTLLLA ISAFSLCLLG TFLVRSGVLV
SVHAFASDPA RGMFILAFMV LVIGGSLLLF AARGHKVRSR VNNALWSRES LLLANNVLLV
AAMLVVLLGT LLPLVHKQLG LGSISIGEPF FNTMFTWLMV PFALLLGVGP LVRWGRDRPR
KIRNLLIIAF ISTLVLSLLL PWLFESKVVA MTVLGLAMAC WIAVLAIAEA ALRISRGTKT
TFSYWGMVAA HLGLAVTIVG IAFSQNYSVE RDVRMKSGDS VDIHEYRFTF RDVKEVTGPN
WRGGVATIGV TRDGKPETVL YAEKRYYNTA GSMMTEAAID GGITRDLYAA LGEELENGAW
AVRLYYKPFV RWIWAGGLMM ALGGLLCLFD PRYRKRVSPQ KTAPEAV
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