| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2252 |
|---|
| Symbol | |
|---|
| ID | 6146279 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 2273207 |
|---|
| End bp | 2273710 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641617129 |
|---|
| Product | IS1 transposase orfB |
|---|
| Protein accession | YP_001744302 |
|---|
| Protein GI | 170682442 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1662] Transposase and inactivated derivatives, IS1 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.657122 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGGCA ACCGCCCGCA TTATGGGCGC TGGCCTCAAC ACGATTTTCC GCCATTTAAA
AAACTCAGGC CGCAGTCGGT AACCTCGCGC ATACAGCCGG GCAGTGACGT CATCGTCTGC
GCGGAAATGG ACGAACAGTG GGGATACGTC GGGGCTAAAT CGCGCCAGCG CTGGCTGTTT
TACGCGTATG ACAGGCTCCG GAAGACGGTT GTTGCGCACG TATTCGGTGA ACGCACTATG
GCGACGCTGG GGCGTCTTAT GAGCCTGCTG TCACCCTTTG ACGTGGTGAT ATGGATGACG
GATGGCTGGC CGCTGTATGA ATCCCGCCTG AAGGGAAAGC TGCACGTAAT CAGCAAGCGA
TATACGCAGC GAATTGAGCG GCATAACCTG AATCTGAGGC AGCACCTGGC ACGGCTGGGA
CGGAAGTCGC TGTCGTTCTC AAAATCGGTG GAGCTGCATG ACAAAGTCAT CGGGCATTAT
CTGAACATAA AACACTATCA ATAA
|
|---|
| Protein sequence | MPGNRPHYGR WPQHDFPPFK KLRPQSVTSR IQPGSDVIVC AEMDEQWGYV GAKSRQRWLF
YAYDRLRKTV VAHVFGERTM ATLGRLMSLL SPFDVVIWMT DGWPLYESRL KGKLHVISKR
YTQRIERHNL NLRQHLARLG RKSLSFSKSV ELHDKVIGHY LNIKHYQ
|
|---|
| |