| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2220 |
|---|
| Symbol | |
|---|
| ID | 6145436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 2238564 |
|---|
| End bp | 2239994 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641617096 |
|---|
| Product | amino acid permease family protein |
|---|
| Protein accession | YP_001744270 |
|---|
| Protein GI | 170680872 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 0.52526 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGGA ATGTTCAGGA AAAACAGCTG CGATGGTACA ACATTGCGCT GATGTCTTTT
ATCACTGTCT GGGGTTTTGG CAACGTTGTT AATAACTACG CCAACCAGGG GCTGGTGGTT
GTTTTTTCAT GGGTGTTTAT CTTTGCGCTC TATTTCACAC CTTATGCGCT AATTGTTGGT
CAGTTAGGCT CGACCTTCAA AGATGGGAAG GGCGGGGTCA GTACCTGGAT TAAACACACG
ATGGGACCCG GACTGGCTTA CCTCGCCGCG TGGACCTACT GGGTAGTGCA TATTCCCTAT
CTGGCACAAA AACCCCAGGC AATACTGATT GCGCTCGGTT GGGCGATGAA AGGCGACGGT
TCGTTAATCA AAGAATATTC AGTCGTAGCG TTACAGGGGT TAACGCTGGT GCTGTTTATC
TTCTTTATGT GGGTTGCTTC ACGCGGTATG AAATCGCTGA AAATCGTCGG TTCTGTGGCA
GGGATTGCGA TGTTTGTTAT GTCGCTCCTG TATGTGGCGA TGGCGGTAAC CGCGCCTGCG
ATTACTGAAG TGCATATTGC GACCACAAAC ATTACCTGGG AAACGTTCAT TCCTCATATC
GACTTTACCT ACATCACCAC TATTTCAATG CTGGTTTTCG CGGTTGGCGG AGCAGAGAAG
ATTTCTCCTT ACGTTAATCA AACGCGCAAC CCAGGAAAAG AATTTCCAAA AGGGATGTTA
TGCCTGGCGG TGATGGTTGC GGTTTGTGCC ATTCTGGGCT CGCTGGCGAT GGGGATGATG
TTTGATTCGC GTAATATCCC GGATGACTTA ATGACTAACG GTCAGTATTA CGCCTTTCAG
AAACTGGGCG AGTATTACAA CATGGGTAAT ACTTTAATGG TGATTTACGC CATTGCGAAT
ACCCTGGGAC AAGTAGCTGC GCTGGTATTC TCGATTGATG CGCCGCTTAA AGTACTATTA
GGCGATGCTG ATAGCAAATA TATTCCAGCC AGTTTATGTC GTACCAACGC TTCTGGTACG
CCCGTTAATG GCTATTTTCT GACCCTGGTG CTGGTGGCGA TCCTGATTAT GCTGCCGACG
CTGGGTATCG GCGATATGAA TAATCTCTAC AAGTGGTTGC TGAATCTTAA CTCGGTGGTG
ATGCCACTAC GTTATCTGTG GGTATTTGTT GCATTTATTG CAGTCGTTCG TCTGGCGCAG
AAATATAAAC CAGAGTATGT CTTTATTCGT AACAGGCCGC TGGCGATGAC TGTCGGGATC
TGGTGTTTTA CCTTTACCGC TTTTGCCTGC CTGACAGGGA TCTTCCCGAA AATGGAAGCC
TTCACTGCAG AGTGGACCTT CCAGTTAGCG CTGAATGTTG CAACGCCGTT TGTCCTGGTT
GGACTGGGGC TGATATTCCC GCTGCTGGCG CGTAAAGCGA ATAGTAAATA A
|
|---|
| Protein sequence | MAGNVQEKQL RWYNIALMSF ITVWGFGNVV NNYANQGLVV VFSWVFIFAL YFTPYALIVG
QLGSTFKDGK GGVSTWIKHT MGPGLAYLAA WTYWVVHIPY LAQKPQAILI ALGWAMKGDG
SLIKEYSVVA LQGLTLVLFI FFMWVASRGM KSLKIVGSVA GIAMFVMSLL YVAMAVTAPA
ITEVHIATTN ITWETFIPHI DFTYITTISM LVFAVGGAEK ISPYVNQTRN PGKEFPKGML
CLAVMVAVCA ILGSLAMGMM FDSRNIPDDL MTNGQYYAFQ KLGEYYNMGN TLMVIYAIAN
TLGQVAALVF SIDAPLKVLL GDADSKYIPA SLCRTNASGT PVNGYFLTLV LVAILIMLPT
LGIGDMNNLY KWLLNLNSVV MPLRYLWVFV AFIAVVRLAQ KYKPEYVFIR NRPLAMTVGI
WCFTFTAFAC LTGIFPKMEA FTAEWTFQLA LNVATPFVLV GLGLIFPLLA RKANSK
|
|---|
| |