| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2206 |
|---|
| Symbol | msbA |
|---|
| ID | 6147458 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 2218888 |
|---|
| End bp | 2220636 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641617082 |
|---|
| Product | lipid transporter ATP-binding/permease protein |
|---|
| Protein accession | YP_001744256 |
|---|
| Protein GI | 170680104 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0719842 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 0.317534 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATAACG ACAAAGATCT CTCTACGTGG CAGACGTTCC GCCGACTGTG GCCAACCATT
GCGCCTTTTA AAGCGGGTCT GATCGTGGCG GGCGTAGCGT TAATCCTCAA CGCAGCCAGC
GATACCTTCA TGTTATCGCT CCTTAAGCCA CTTCTTGATG ATGGCTTTGG TAAAACAGAT
CGCTCCGTGC TGGTGTGGAT GCCGCTGGTG GTGATCGGGC TGATGATTTT GCGTGGTATC
ACCAGCTATG TCTCCAGCTA CTGTATCTCC TGGGTATCAG GAAAGGTGGT AATGACCATG
CGTCGCCGCC TGTTTGGTCA CATGATGGGA ATGCCGGTTT CATTCTTTGA CAAACAGTCA
ACGGGTACGC TGTTGTCACG TATCACCTAC GATTCCGAAC AGGTTGCTTC TTCCTCTTCC
GGCGCACTGA TTACTGTTGT GCGTGAAGGT GCGTCGATCA TCGGCCTGTT CATCATGATG
TTCTATTACA GTTGGCAACT GTCGATCATT TTGATTGTGC TGGCACCGAT TGTTTCGATT
GCGATTCGCG TTGTATCGAA GCGTTTTCGC AATATCAGTA AAAACATGCA GAACACCATG
GGGCAGGTGA CCACCAGCGC CGAACAAATG CTGAAAGGCC ATAAAGAAGT ATTGATTTTC
GGTGGTCAGG AAGTGGAAAC GAAACGCTTC GATAAAGTCA GCAACCGAAT GCGTCTTCAG
GGGATGAAAA TGGTTTCAGC CTCTTCCATC TCTGATCCGA TCATTCAGCT GATCGCCTCT
TTGGCGCTGG CGTTTGTTCT GTATGCGGCA AGCTTCCCAA GTGTCATGGA TAGCCTGACT
GCCGGTACGA TTACCGTTGT TTTCTCTTCA ATGATTGCAC TTATGCGTCC GCTGAAATCG
CTGACCAACG TTAACGCCCA GTTCCAGCGC GGTATGGCGG CTTGTCAGAC GCTGTTTACC
ATTCTGGACA GTGAGCAGGA GAAAGACGAA GGTAAGCGCG TGATCGAGCG TGCGACTGGC
GACGTGGAAT TCCGCAATGT CACCTTTACT TATCCGGGAC GTGACGTACC CGCATTGCGT
AACATCAACC TGAAAATTCC GGCAGGGAAG ACGGTTGCTC TAGTTGGACG CTCTGGTTCA
GGTAAATCAA CCATCGCCAG CCTGATCACG CGTTTTTACG ATATTGATGA AGGCGAAATC
CTGATGGATG GTCACGATCT GCGCGAGTAT ACCCTGGCGT CGTTACGTAA CCAGGTTGCT
CTGGTGTCGC AGAATGTCCA TCTGTTTAAC GATACGGTTG CCAACAACAT TGCTTACGCA
CGGACTGAAC AGTACAGCCG TGAGCAAATT GAAGAAGCGG CGCGTATGGC CTACGCCATG
GACTTCATCA ATAAGATGGA TAACGGTCTC GATACAGTGA TTGGTGAAAA CGGCGTGCTG
CTCTCTGGCG GTCAGCGTCA GCGTATTGCT ATCGCTCGAG CCTTGTTGCG TGATAGCCCG
ATTCTGATTC TGGACGAAGC TACCTCGGCG TTGGATACCG AATCCGAACG TGCGATTCAG
GCGGCACTGG ATGAGTTGCA GAAAAACCGT ACCTCTCTGG TGATTGCCCA CCGCTTGTCT
ACCATTGAAA AGGCAGACGA AATCGTGGTC GTCGAGGATG GTGTCATTGT GGAACGCGGT
ACGCATAACG ATTTGCTTGA GCACCGTGGC GTTTACGCGC AACTTCACAA AATGCAGTTT
GGCCAATGA
|
|---|
| Protein sequence | MHNDKDLSTW QTFRRLWPTI APFKAGLIVA GVALILNAAS DTFMLSLLKP LLDDGFGKTD
RSVLVWMPLV VIGLMILRGI TSYVSSYCIS WVSGKVVMTM RRRLFGHMMG MPVSFFDKQS
TGTLLSRITY DSEQVASSSS GALITVVREG ASIIGLFIMM FYYSWQLSII LIVLAPIVSI
AIRVVSKRFR NISKNMQNTM GQVTTSAEQM LKGHKEVLIF GGQEVETKRF DKVSNRMRLQ
GMKMVSASSI SDPIIQLIAS LALAFVLYAA SFPSVMDSLT AGTITVVFSS MIALMRPLKS
LTNVNAQFQR GMAACQTLFT ILDSEQEKDE GKRVIERATG DVEFRNVTFT YPGRDVPALR
NINLKIPAGK TVALVGRSGS GKSTIASLIT RFYDIDEGEI LMDGHDLREY TLASLRNQVA
LVSQNVHLFN DTVANNIAYA RTEQYSREQI EEAARMAYAM DFINKMDNGL DTVIGENGVL
LSGGQRQRIA IARALLRDSP ILILDEATSA LDTESERAIQ AALDELQKNR TSLVIAHRLS
TIEKADEIVV VEDGVIVERG THNDLLEHRG VYAQLHKMQF GQ
|
|---|
| |