| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2012 |
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| Symbol | mfd |
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| ID | 6142779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 2032545 |
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| End bp | 2035991 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641616888 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001744064 |
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| Protein GI | 170682845 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.00267728 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTGAAC AATATCGTTA TACGCTGCCC GTCAAAGCGG GTGAGCAGCG TCTGCTGGGC
GAGTTAACTG GCGCTGCCTG CGCGACGCTG GTAGCGGAAA TTGCCGAACG TCACGCCGGA
CCAGTGGTGC TTATTGCGCC AGATATGCAA AATGCTCTGC GTTTGCATGA TGAAATTAGC
CAGTTTACCG ACCAGATGGT GATGAATCTG GCGGACTGGG AAACTCTTCC CTACGACAGT
TTTTCGCCTC ATCAGGACAT TATCTCCTCG CGCCTTTCCA CCCTTTACCA GCTACCGACG
ATGCAGCGTG GCGTACTGAT TGTTCCGGTG AATACGCTTA TGCAGCGCGT TTGCCCGCAC
AGTTTTCTCC ACGGCCATGC GCTGGTGATG AAAAAAGGTC AGCGCCTGTC ACGAGATGCA
TTACGAACCC AACTGGACAG CGCCGGTTAT CGCCATGTTG ACCAGGTGAT GGAGCACGGC
GAATACGCCA CGCGCGGCGC GTTGCTGGAT CTCTTCCCGA TGGGGAGTGA GCTGCCTTAT
CGTCTTGATT TCTTTGATGA TGAAATCGAC AGCCTGCGGG TGTTTGACGT CGACAGCCAG
CGCACGCTGG AGGAAGTAGA AGCGATCAAT CTGCTGCCCG CGCACGAATT TCCGACCGAT
AAAGCGGCAA TTGAACTGTT CCGCAGCCAG TGGCGCGATA CCTTCGAAGT GAAGCGCGAT
CCGGAACATA TTTACCAGCA AGTGAGTAAA GGCACATTAC CTGCCGGGAT CGAGTACTGG
CAGCCGCTAT TCTTCAGCGA ACCACTGCCG CCGCTGTTCA GTTATTTCCC TGCCAATACC
TTGCTGGTGA ATACTGGCGA TCTGGAAAAC AGTGCCGAAC GTTTCCAGGC TGACACGCTG
GCGCGTTTTG AGAATCGCGG CGTCGATCCG ATGCGCCCAC TGTTGCCACC ACAATCGCTC
TGGCTGCGGG TGGACGAGCT CTTCTCAGAG CTGAAAAACT GGCCCCGAGT GCAGCTAAAA
ACTGAACATT TACCGACAAA AGCCGCGAAT GCCAATTTAG GTTTCCAGAA ACTGCCAGAC
CTGGCCGTTC AGGCACAACA AAAAGCACCG CTGGATGCGC TGCGTAAGTT CCTCGAGTCT
TTCGACGGTC CGGTGGTGTT CTCGGTAGAA AGTGAAGGTC GCCGTGAAGC GCTGGGTGAA
CTGCTCGCGC GAATTAAAAT TGCTCCTCAA CGCATTATGC GTCTTGATGA AGCCAAAGAC
CGTGGGCGTT ATCTGATGAT TGGCGCTGCC GAACATGGTT TTGTCGATAC GGTGCGTAAT
CTGGCGCTGA TTTGCGAAAG CGATCTGCTC GGTGAACGTG TTGCCCGTCG TCGTCAGGAC
TCTCGCCGCA CCATCAACCC CGATACACTG ATCCGTAACC TCGCGGAGCT GCATATTGGT
CAGCCGGTGG TCCATCTGGA GCACGGTGTC GGCCGCTATG CCGGAATGAC CACGCTCGAA
GCGGGCGGCA TTACTGGCGA GTATTTGATG CTCACCTATG CCAACGACGC CAAACTGTAT
GTTCCGGTGT CGTCACTGCA TCTGATTAGC CGTTACGCGG GTGGCGCGGA AGAAAACGCC
CCGCTGCATA AACTTGGCGG CGATGCGTGG TCACGCGCTC GGCAGAAAGC GGCGGAAAAA
GTGCGTGATG TGGCAGCAGA ATTGCTGGAT ATCTACGCGC AACGAGCCGC CAAAGAGGGC
TTCGCGTTTA AACACGATCG TGAGCAGTAT CAGTTGTTCT GCGACAGCTT CCCGTTTGAA
ACCACGCCGG ATCAGGCACA GGCCATTAAT GCGGTACTTA GCGACATGTG TCAGCCGCTG
GCAATGGATC GTCTGGTGTG CGGCGATGTT GGCTTTGGTA AAACAGAAGT GGCGATGCGC
GCCGCTTTCC TGGCAGTAGA TAACCACAAG CAGGTGGCGG TGCTGGTGCC TACCACCCTT
CTCGCGCAGC AGCATTACGA CAACTTCCGC GACCGTTTCG CTAACTGGCC AGTACGCATC
GAAATGATCT CCCGTTTCCG TAGCGCCAAA GAGCAGACGC AAATCCTTGC GGAAGTGGCG
GAAGGGAAAA TCGATATTCT GATCGGTACG CACAAACTGC TGCAAAATGA CGTCAAGTTT
AAAGATTTAG GTCTGCTGAT TGTCGATGAA GAACACCGCT TCGGGGTGCG TCATAAAGAG
CGCATTAAAG CGATGCGGGC GAACGTGGAT ATTCTGACAC TTACCGCAAC GCCGATCCCA
CGTACGCTGA ATATGGCAAT GAGCGGAATG CGTGACCTGT CGATTATCGC CACGCCGCCC
GCCCGTCGTC TGGCAGTTAA AACCTTTGTC CGTGAGTATG ACAGCCTGGT GGTCAGGGAG
GCGATCCTGC GTGAAATTTT GCGCGGGGGG CAGGTTTATT ATCTTTACAA TGATGTGGAA
AACATCCAGA AAGCCGCCGA ACGGCTGGCA GAACTGGTGC CAGAAGCGCG GATCGCCATC
GGTCACGGGC AAATGCGTGA GCGCGAACTG GAACGGGTGA TGAATGATTT CCATCATCAA
CGTTTCAACG TGCTGGTTTG TACCACCATT ATCGAAACCG GGATCGACAT CCCGACAGCC
AACACCATTA TCATTGAACG CGCGGATCAC TTCGGTCTGG CGCAGCTGCA CCAGTTACGC
GGTCGCGTCG GACGTTCGCA TCATCAGGCA TATGCATGGT TGCTGACACC GCATCCAAAA
GCGATGACTA CCGATGCACA AAAACGTCTT GAAGCGATTG CCTCGCTGGA AGATCTCGGT
GCAGGTTTTG CGCTGGCAAC GCACGATCTG GAGATCCGCG GCGCGGGTGA ACTGCTTGGC
GAAGAACAAA GCGGCTCAAT GGAAACCATC GGTTTCTCGC TGTATATGGA GTTGCTGGAA
AACGCCGTCG ATGCGCTGAA AGCCGGACGC GAGCCGTCGC TGGAAGATCT CACCAGCCAG
CAAACAGAAG TCGAGCTGCG GATACCGTCG CTATTGCCAG ATGATTTCAT TCCTGACGTG
AATACGCGTT TGTCGTTCTA TAAACGTATT GCCAGCGCCA AAACGGAAAA CGAACTGGAA
GAGATCAAAG TCGAGCTTAT CGATCGCTTC GGCCTGCTGC CGGATCCGGC GCGTACCCTG
CTGGATATTG CCCGTCTGCG CCAGCAAGCG CAGAAACTGG GGATCAGGAA GCTGGAAGGT
AATGAGAAAG GCGGCGTGAT CGAATTTGCC GAGAAGAATC ACGTTAATCC GGCCTGGTTG
ATTGGTTTGC TGCAAAAACA GCCGCAGCAT TATCGCCTCG ATGGCCCGAC GCGCCTGAAG
TTTATTCAGG ATTTGAGTGA GCGGAAAACG CGTATCGAAT GGGTACGCCA GTTTATGCGT
GAACTGGAAG AGAACGCGAT CGCTTGA
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| Protein sequence | MPEQYRYTLP VKAGEQRLLG ELTGAACATL VAEIAERHAG PVVLIAPDMQ NALRLHDEIS
QFTDQMVMNL ADWETLPYDS FSPHQDIISS RLSTLYQLPT MQRGVLIVPV NTLMQRVCPH
SFLHGHALVM KKGQRLSRDA LRTQLDSAGY RHVDQVMEHG EYATRGALLD LFPMGSELPY
RLDFFDDEID SLRVFDVDSQ RTLEEVEAIN LLPAHEFPTD KAAIELFRSQ WRDTFEVKRD
PEHIYQQVSK GTLPAGIEYW QPLFFSEPLP PLFSYFPANT LLVNTGDLEN SAERFQADTL
ARFENRGVDP MRPLLPPQSL WLRVDELFSE LKNWPRVQLK TEHLPTKAAN ANLGFQKLPD
LAVQAQQKAP LDALRKFLES FDGPVVFSVE SEGRREALGE LLARIKIAPQ RIMRLDEAKD
RGRYLMIGAA EHGFVDTVRN LALICESDLL GERVARRRQD SRRTINPDTL IRNLAELHIG
QPVVHLEHGV GRYAGMTTLE AGGITGEYLM LTYANDAKLY VPVSSLHLIS RYAGGAEENA
PLHKLGGDAW SRARQKAAEK VRDVAAELLD IYAQRAAKEG FAFKHDREQY QLFCDSFPFE
TTPDQAQAIN AVLSDMCQPL AMDRLVCGDV GFGKTEVAMR AAFLAVDNHK QVAVLVPTTL
LAQQHYDNFR DRFANWPVRI EMISRFRSAK EQTQILAEVA EGKIDILIGT HKLLQNDVKF
KDLGLLIVDE EHRFGVRHKE RIKAMRANVD ILTLTATPIP RTLNMAMSGM RDLSIIATPP
ARRLAVKTFV REYDSLVVRE AILREILRGG QVYYLYNDVE NIQKAAERLA ELVPEARIAI
GHGQMREREL ERVMNDFHHQ RFNVLVCTTI IETGIDIPTA NTIIIERADH FGLAQLHQLR
GRVGRSHHQA YAWLLTPHPK AMTTDAQKRL EAIASLEDLG AGFALATHDL EIRGAGELLG
EEQSGSMETI GFSLYMELLE NAVDALKAGR EPSLEDLTSQ QTEVELRIPS LLPDDFIPDV
NTRLSFYKRI ASAKTENELE EIKVELIDRF GLLPDPARTL LDIARLRQQA QKLGIRKLEG
NEKGGVIEFA EKNHVNPAWL IGLLQKQPQH YRLDGPTRLK FIQDLSERKT RIEWVRQFMR
ELEENAIA
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