Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1954 |
Symbol | |
ID | 6142884 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 1975345 |
End bp | 1976079 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641616830 |
Product | putative type IV pilus assembly protein PilZ |
Protein accession | YP_001744006 |
Protein GI | 170682400 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5581] Predicted glycosyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.165667 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.123156 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTCATT ACCATGAGCA GTTCCTGAAA CAAAATCCGT TAGCCGTCCT GGGCGTGTTA CGCGATTTGC ACAAAGCCGC AATTCCTTTG CGTATTAGCT GGAATGGCGG GCAGCTGATC AGCAAAATAC TGGCAATAAC TCCGGATAAA CTGGTGCTGG ATTTCGGCAG CCAGGCCGAA GACAACATCG CCGTGCTAAA GGCGCAGCAC ATTACCATTA CCGCCGAAAC TCAGGGTGCG AAAGTCGAGT TTACTGTTGA ACAACTACAG CAGAGTGAAT ACTTGCAGCT TCCGGCATTT ATTACCGTAC CGCCTCCCAC CTTGTGGTTT GTACAACGAC GCCGATATTT CCGCATCTCC GCCCCACTCC ATCCGCCTTA TTTTTGCCAG ACCAAACTGG CGGATAACAG TACGTTACGT TTCCGCCTGT ATGATTTATC GTTAGGCGGC ATGGGCGCAT TACTGGAAAC AGCAAAGCCT GCCGGATTGC ACGAAGGCAT GCGCTTCGCT CAGATTGAAG TCAACATGGG GCAATGGGGT GTTTTTCACT TTGACGCCCA GTTAATCTCC ATCAGCGAGC GCAAAGTGAT TGATGGCAAG AATGAAACCA TCACCACTCC CCGTCTGAGC TTCCGTTTTC TTAACGTCAG CCCGACGGTG GAGCGGCAAT TACAGCGGAT TATTTTCTCT CTCGAGCGAG AAGCCCGGAA AAAAGCGGAC AAAGTGCGCG ACTGA
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Protein sequence | MSHYHEQFLK QNPLAVLGVL RDLHKAAIPL RISWNGGQLI SKILAITPDK LVLDFGSQAE DNIAVLKAQH ITITAETQGA KVEFTVEQLQ QSEYLQLPAF ITVPPPTLWF VQRRRYFRIS APLHPPYFCQ TKLADNSTLR FRLYDLSLGG MGALLETAKP AGLHEGMRFA QIEVNMGQWG VFHFDAQLIS ISERKVIDGK NETITTPRLS FRFLNVSPTV ERQLQRIIFS LEREARKKAD KVRD
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