| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1894 |
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| Symbol | oppD |
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| ID | 6144189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1914712 |
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| End bp | 1915725 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641616770 |
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| Product | oligopeptide transporter ATP-binding component |
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| Protein accession | YP_001743948 |
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| Protein GI | 170684293 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.702324 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.0894334 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTAA TTGAAACTGC AACTGTGCCG CTCGCACAAC AACAGGCTGA CGCACTGCTG
AACGTGAAAG ATTTGCGTGT CACCTTTAAT ACCCCGGACG GCGACGTCAC GGCGGTCAAT
GATCTGAATT TTTCCCTACG TGCCGGAGAA ACGCTGGGCA TTGTAGGTGA GTCTGGTTCG
GGTAAATCGC AAACTGCATT TGCGTTGATG GGCCTGTTGG CTGCCAACGG ACGTATTGGC
GGATCGGCAA CCTTCAATGG GCGTGAAATC CTCAATTTGC CAGAGCGTGA ACTCAATAAA
CTGCGCGCTG AACAAATCTC AATGATTTTT CAGGACCCAA TGACTTCGTT GAATCCCTAT
ATGCGCGTCG GTGAGCAGTT GATGGAAGTG CTGATGCTGC ATAAGAACAT GAGCAAAGCT
GAGGCGTTTG AAGAGTCGGT GCGGATGCTC GATGCGGTAA AAATGCCGGA AGCGCGTAAA
CGCATGAAAA TGTACCCGCA CGAATTTTCT GGCGGCATGC GTCAGCGAGT TATGATTGCG
ATGGCATTGC TATGTCGACC TAAGCTGCTG ATTGCGGATG AACCCACTAC TGCGCTGGAC
GTCACCGTAC AGGCGCAGAT CATGACGCTA TTGAATGAAC TGAAGCGGGA ATTTAATACC
GCCATCATTA TGATTACCCA CGATCTTGGC GTGGTGGCGG GGATCTGCGA CAAAGTGCTG
GTAATGTACG CCGGGCGCAC GATGGAATAT GGCAACGCGC GCGATGTCTT TTATCAACCC
GTTCATCCTT ATTCTATCGG TTTGCTCAAC GCGGTGCCGC GTCTCGATGC GGAAGGTGAA
ACAATGTTGA CCATCCCTGG TAATCCGCCA AACCTGCTGC GATTACCGAA AGGTTGCCCG
TTCCAGCCAC GTTGTCCGCA TGCGATGGAA ATTTGTAGTA GCGCACCGCC GCTGGAAGAG
TTTACGCCTG GCCGTCTGCG TGCTTGCTTT AAACCGGTGG AGGAACTGTT ATGA
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| Protein sequence | MSVIETATVP LAQQQADALL NVKDLRVTFN TPDGDVTAVN DLNFSLRAGE TLGIVGESGS
GKSQTAFALM GLLAANGRIG GSATFNGREI LNLPERELNK LRAEQISMIF QDPMTSLNPY
MRVGEQLMEV LMLHKNMSKA EAFEESVRML DAVKMPEARK RMKMYPHEFS GGMRQRVMIA
MALLCRPKLL IADEPTTALD VTVQAQIMTL LNELKREFNT AIIMITHDLG VVAGICDKVL
VMYAGRTMEY GNARDVFYQP VHPYSIGLLN AVPRLDAEGE TMLTIPGNPP NLLRLPKGCP
FQPRCPHAME ICSSAPPLEE FTPGRLRACF KPVEELL
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