| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1893 |
|---|
| Symbol | oppF |
|---|
| ID | 6143224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1913711 |
|---|
| End bp | 1914715 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641616769 |
|---|
| Product | oligopeptide ABC transporter, ATP-binding protein OppF |
|---|
| Protein accession | YP_001743947 |
|---|
| Protein GI | 170680026 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.854707 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.049175 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCTG TAACCGAAGG AAGAAAAGTC CTCCTCGAAA TCGCCGATCT GAAAGTGCAC
TTTGAAATCA AAGATGGCAA ACAGTGGTTC TGGCAACCGC CGAAAACGCT CAAAGCCGTC
GATGGTGTAA CTCTTCGCCT GTATGAAGGG GAAACATTAG GTGTGGTAGG GGAATCGGGA
TGCGGTAAGT CCACCTTTGC TCGCGCCATC ATCGGTTTGG TCAAGGCGAC CGACGGTCAT
GTTGCCTGGT TAGGTAAAGA GTTGCTGGGC ATGAAGCCCG ATGAATGGCG TGCCGTTCGC
AGTGATATTC AGATGATTTT CCAGGATCCG TTGGCATCGC TGAACCCGCG TATGACCATC
GGCGAGATCA TCGCTGAACC ACTGCGTACT TATCATCCGA AAATGTCACG CCAGGAAGTT
CGCGAGCGCG TGAAGGCGAT GATGCTGAAA GTCGGGTTAT TGCCTAACCT GATTAACCGC
TATCCGCATG AGTTCTCTGG TGGGCAGTGC CAGCGTATCG GGATTGCACG TGCACTTATT
CTTGAACCGA AGCTGATTAT CTGTGATGAG CCGGTGTCGG CGCTGGATGT GTCAATTCAG
GCGCAGGTGG TCAACCTGCT CCAGCAGTTA CAACGTGAGA TGGGATTGTC ATTAATTTTT
ATCGCTCACG ACCTGGCCGT GGTAAAACAC ATTTCCGATC GTGTGTTGGT GATGTATCTC
GGCCATGCGG TAGAACTGGG GACCTATGAT GAGGTCTACC ACAATCCACT ACATCCTTAC
ACCAGGGCAT TGATGTCGGC AGTCCCCATA CCTGATCCGG ATCTGGAGAA GAACAAAACC
ATCCAGTTAC TGGAAGGGGA ATTACCGTCG CCGATCAACC CGCCTTCCGG TTGTGTTTTC
CGTACCCGTT GCCCGATTGC CGGTCCGGAG TGCGCCAAAA CACGTCCTGT GCTGGAGGGC
AGTTTCAGAC ACGCCGTTTC TTGCCTGAAA GTCGATCCAC TTTAA
|
|---|
| Protein sequence | MNAVTEGRKV LLEIADLKVH FEIKDGKQWF WQPPKTLKAV DGVTLRLYEG ETLGVVGESG
CGKSTFARAI IGLVKATDGH VAWLGKELLG MKPDEWRAVR SDIQMIFQDP LASLNPRMTI
GEIIAEPLRT YHPKMSRQEV RERVKAMMLK VGLLPNLINR YPHEFSGGQC QRIGIARALI
LEPKLIICDE PVSALDVSIQ AQVVNLLQQL QREMGLSLIF IAHDLAVVKH ISDRVLVMYL
GHAVELGTYD EVYHNPLHPY TRALMSAVPI PDPDLEKNKT IQLLEGELPS PINPPSGCVF
RTRCPIAGPE CAKTRPVLEG SFRHAVSCLK VDPL
|
|---|
| |