Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1876 |
Symbol | ompW |
ID | 6145746 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1899753 |
End bp | 1900391 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641616752 |
Product | outer membrane protein W |
Protein accession | YP_001743930 |
Protein GI | 170682349 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3047] Outer membrane protein W |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.00000262717 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAAAAGT TAACAGTGGC GGCTTTGGCA GTAACAACTC TTCTCTCTGG CAGTGCCTAT GCGCATGAAG CAGGCGAATT TTTTATGCGT GCAGGGTCTG CAACCGTACG TCCAACAGAA GGTGCTGGTG GTACGTTAGG AAGTCTGGGT GGATTCAGCG TGACCAATAA CACGCAACTG GGCCTGACGT TTACTTATAT GGCGACCGAC AACATTGGTG TGGAATTACT GGCTGCGACG CCGTTCCGCC ATAAAATCGG CACCCGGGCG ACCGGCGATA TTGCAACCGT TCATCATCTG CCGCCAACAC TGATGGCGCA GTGGTATTTT GGTGATGCCA GCAGCAAATT CCGTCCTTAC GTTGGGGCAG GTATTAACTA CACCACCTTC TTTGATAATG GATTTAACGA TCATGGCAAA GAGGCGGGGC TTTCCGATCT CAGTCTGAAA GATTCCTGGG GAGCTGCCGG GCAGGTGGGG GTTGATTATC TGATTAACCG TGACTGGTTG GTTAACATGT CAGTGTGGTA CATGGATATC GATACCACCG CCAATTATAA ACTGGGCGGT GCACAGCAAC ACGATAGCGT ACGCCTCGAT CCGTGGGTGT TTATGTTCTC AGCAGGATAT CGTTTTTAA
|
Protein sequence | MKKLTVAALA VTTLLSGSAY AHEAGEFFMR AGSATVRPTE GAGGTLGSLG GFSVTNNTQL GLTFTYMATD NIGVELLAAT PFRHKIGTRA TGDIATVHHL PPTLMAQWYF GDASSKFRPY VGAGINYTTF FDNGFNDHGK EAGLSDLSLK DSWGAAGQVG VDYLINRDWL VNMSVWYMDI DTTANYKLGG AQQHDSVRLD PWVFMFSAGY RF
|
| |