| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1841 |
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| Symbol | rnb |
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| ID | 6147184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 1864054 |
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| End bp | 1865988 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641616717 |
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| Product | exoribonuclease II |
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| Protein accession | YP_001743895 |
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| Protein GI | 170681733 |
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| COG category | [K] Transcription |
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| COG ID | [COG4776] Exoribonuclease II |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02062] exoribonuclease II |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.816503 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000000000000293222 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTCAGG ACAACCCGCT GCTAGCGCAG CTTAAACAGC AACTGCATTC CCAGACGCCA
CGCGCTGAAG GGGTGGTAAA AGCCACAGAA AAAGGCTTTG GCTTCCTGGA AGTCGACGCG
CAAAAAAGTT ATTTCATTCC GCCGCCGCAG ATGAAAAAAG TCATGCATGG CGACCGAATT
ATCGCGGTGA TCCACAGTGA AAAAGAACGT GAATCCGCAG AGCCAGAAGA ACTGGTTGAA
CCGTTCCTGA CTCGTTTCGT GGGTAAAGTT CAGGGCAAAA ATGACCGTCT GGCCATCGTT
CCTGATCATC CACTCTTAAA AGACGCCATT CCTTGCCGCG CAGCCCGTGG CCTGAACCAC
GAGTTTAAAG AAGGCGACTG GGCGGTTGCC GAAATGCGCC GTCATCCGCT GAAAGGCGAT
CGTTCTTTCT ATGCTGAACT GACACAATAC ATCACTTTTG GTGACGATCA CTTTGTACCG
TGGTGGGTTA CCCTTGCGCG CCATAATCTG GAAAAAGAAG CACCAGACGG CGTCGCTACC
GAAATGCTCG ATGAAGGTCT GGTTCGTGAA GATCTGACTG CGCTGGATTT TGTCACCATC
GACAGTGCCA GCACAGAAGA TATGGATGAC GCCCTTTTCG CTAAGGCGTT GCCGGATGAC
AAACTTCAGC TGATTGTGGC GATTGCCGAT CCAACTGCGT GGATTGCTGA AGGCAGCAAG
CTGGACAAAG CCGCGAAAAT TCGCGCATTC ACCAACTATC TGCCTGGCTT CAACATCCCT
ATGCTGCCTC GCGAGCTTTC TGACGATCTC TGCTCACTGC GCGCCAATGA AGTCCGCCCG
GTACTGGCAT GCCGCATGAC GCTCTCCGCT GATGGCACCA TTGAAGATAA TATCGAATTC
TTTGCCGCCA CCATCGAATC CAAAGCGAAG CTGGTGTATG ACCAGGTTTC TGACTGGCTG
GAAAATACCG GTGACTGGCA GCCTGAAAGC GAAGCAATTG CCGAACAAGT CCGTTTGCTA
GCGCAAATTT GCCAACGCCG CGGCGAGTGG CGTCATAACC ACGCACTGGT GTTTAAAGAT
CGCCCGGATT ACCGCTTTAT TCTCGGTGAA AAAGGAGAAG TGCTGGATAT CGTCGCCGAG
CCTCGTCGCA TTGCCAACCG TATCGTCGAA GAAGCGATGA TTGCCGCTAA CATTTGTGCG
GCCCGCGTAC TGCGCGATAA GCTCGGTTTT GGCATCTATA ACGTGCATAT GGGCTTTGAT
CCGGCGAATG CCGACGCGCT GGCAGCGTTG CTGAAAACCC ACGGTCTGCA TGTCGATGCC
GAAGAAGTGC TCACGCTGGA CGGTTTCTGC AAACTGCGTC GTGAACTGGA TGCGCAACCA
ACTGGTTTCC TCGACAGCCG CATTCGTCGC TTCCAGTCAT TTGCTGAAAT TAGCACTGAA
CCCGGTCCTC ACTTTGGCCT CGGTCTGGAA GCATACGCCA CCTGGACTTC GCCGATCCGT
AAATATGGCG ACATGATCAA CCACCGTCTG CTGAAAGCGG TTATCAAAGG CGAAACTGCG
ACGCGTCCAC AGGATGAAAT CACTGTCCAA ATGGCCGAGC GTCGCCGTCT CAACCGGATG
GCAGAACGTG ATGTTGGCGA CTGGTTATAC GCACGCTTCC TGAAAGACAA AGCCGGGACC
GACACCCGTT TCGCGGCGGA AATTGTCGAT ATCAGCCGTG GCGGCATGCG TGTGCGTTTG
GTTGATAACG GCGCTATCGC CTTTATTCCG GCACCTTTCT TACACGCTGT GCGCGATGAA
CTGGTTTGCA GCCAGGAAAA CGGCACTGTA CAAATTAAAG GTGAAACGGC TTACAAAGTG
ACTGACGTTA TTGACGTCAC CATTGCCGAA GTCCGCATGG AAACCCGCAG CATTATTGCG
CGCCCGGTCG CGTAA
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| Protein sequence | MFQDNPLLAQ LKQQLHSQTP RAEGVVKATE KGFGFLEVDA QKSYFIPPPQ MKKVMHGDRI
IAVIHSEKER ESAEPEELVE PFLTRFVGKV QGKNDRLAIV PDHPLLKDAI PCRAARGLNH
EFKEGDWAVA EMRRHPLKGD RSFYAELTQY ITFGDDHFVP WWVTLARHNL EKEAPDGVAT
EMLDEGLVRE DLTALDFVTI DSASTEDMDD ALFAKALPDD KLQLIVAIAD PTAWIAEGSK
LDKAAKIRAF TNYLPGFNIP MLPRELSDDL CSLRANEVRP VLACRMTLSA DGTIEDNIEF
FAATIESKAK LVYDQVSDWL ENTGDWQPES EAIAEQVRLL AQICQRRGEW RHNHALVFKD
RPDYRFILGE KGEVLDIVAE PRRIANRIVE EAMIAANICA ARVLRDKLGF GIYNVHMGFD
PANADALAAL LKTHGLHVDA EEVLTLDGFC KLRRELDAQP TGFLDSRIRR FQSFAEISTE
PGPHFGLGLE AYATWTSPIR KYGDMINHRL LKAVIKGETA TRPQDEITVQ MAERRRLNRM
AERDVGDWLY ARFLKDKAGT DTRFAAEIVD ISRGGMRVRL VDNGAIAFIP APFLHAVRDE
LVCSQENGTV QIKGETAYKV TDVIDVTIAE VRMETRSIIA RPVA
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