| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1833 |
|---|
| Symbol | eefD |
|---|
| ID | 6144437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1853956 |
|---|
| End bp | 1855119 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641616709 |
|---|
| Product | multidrug efflux transport protein EefD |
|---|
| Protein accession | YP_001743887 |
|---|
| Protein GI | 170680921 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.531383 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0000436585 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAGAG TCTCTCTTTC ATGGGCATTG ATTCTTGGTC TTTTAGCCGG TATCGGCCCG
ATGTGTACCG ATCTTTATTT GCCGGCTTTG CCGGAGATGT CTGAGCAACT GGCGGCAACC
ACGACCATAA CGCAATTAAC CCTGACCGCA TCACTGATTG GTCTTGGCGT CGGACAACTG
TTATTTGGCC CTCTGAGCGA CAAAATAGGG CGTAAACGTC CGTTAATCTT GTCGTTGCTA
TTGTTTATTG TTTCTTCCAT TTTGTGCGCG ACAACGAACA ATATTTACTG GCTGGTGGTC
TGGCGTTTTA TTCAAGGGAT CGCGGGGGCG GGTGGTTCGG TGCTCTCTCG TTCTATTGCT
CGTGACAAAT ATCAGGGAGT AACGTTGACC CAGTTTTTTG CGCTGTTAAT GACGGTGAAT
GGCCTGGCAC CGGTGTTGTC GCCAGTGCTG GGCGGGTACA TTGTTAGCAC TTTTGACTGG
CGCACTTTAT TCTGGGTAAT GGCTGAAATT AGCACCGTAC TGTTGCTGGG CTGCCTGTTA
TTTATTAATG AGACCTTGCC AGAAAATAAA AGGGGCTCAT CATTGCTATT AACCGGACGA
AGCGTGGTGC AGAACCGCCG TTTTATGCGC TTTTGCCTGA TTCAAAGTTT TATGCTGGCC
GGTTTGTTTG CATATATCGG CTCTTCGTCG TTCGTGTTGC AGAAGGAATT TGGCTTTAGT
CCAATGCAAT TTAGCCTGGT GTTTGGCCTT AACGGCATCG GACTTATCAT TGCTTCATGG
ATCTTCTCGC GCCTGGCGCG ACGGATTAAC GCGATGACAT TGTTGCGAGG TGGCCTGATA
GCGGCAATTT TGTGTGCATT GCTCACGGTC TTATGCGCAT GGACACAATT GCCCATTCCG
GCACTGGTGG CATTATTTTT CACCATCGCA TTTTGTAGCG GCATCGGCAC TGTTGGCGGG
GCAGAGGCTA TGAGTGCAGT AGGGACGCAG GAATCTGGAA CGGCGTCTGC GTTGATGGGG
ATGAGCATGT TTGTCTTCGG CGGTATAGCC GCGCCATTGT CGGGAATTGG CGGAGAAACA
CTGTTAAAAA TGAGTCTGGC AATTACGGTG TGTTATACGC TGGCATTGCT GGTTGCTCTC
ACCAGAATCG ACAATCAAAA GTAA
|
|---|
| Protein sequence | MARVSLSWAL ILGLLAGIGP MCTDLYLPAL PEMSEQLAAT TTITQLTLTA SLIGLGVGQL
LFGPLSDKIG RKRPLILSLL LFIVSSILCA TTNNIYWLVV WRFIQGIAGA GGSVLSRSIA
RDKYQGVTLT QFFALLMTVN GLAPVLSPVL GGYIVSTFDW RTLFWVMAEI STVLLLGCLL
FINETLPENK RGSSLLLTGR SVVQNRRFMR FCLIQSFMLA GLFAYIGSSS FVLQKEFGFS
PMQFSLVFGL NGIGLIIASW IFSRLARRIN AMTLLRGGLI AAILCALLTV LCAWTQLPIP
ALVALFFTIA FCSGIGTVGG AEAMSAVGTQ ESGTASALMG MSMFVFGGIA APLSGIGGET
LLKMSLAITV CYTLALLVAL TRIDNQK
|
|---|
| |