Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1829 |
Symbol | sapB |
ID | 6143603 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 1850265 |
End bp | 1851230 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641616705 |
Product | peptide ABC transporter, permease protein SapB |
Protein accession | YP_001743883 |
Protein GI | 170683242 |
COG category | [V] Defense mechanisms |
COG ID | [COG4168] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.000908209 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTATCT TCACCTTACG CCGTATTTTG TTATTGATTG TCACCTTGTT CCTGCTGACC TTCGTTGGCT TCAGCTTGAG CTATTTCACC CCACATGCGC CGTTACAAGG CGCGTCACTG TGGAATGCCT GGGTGTTCTG GTTTAACGGC CTGATCCACT GGGATTTTGG TGTTTCCAGC ATTAACGGTC AACCGATTGC CGAACAGTTA AAAGAGGTCT TCCCGGCGAC GATGGAGCTG TGCATCCTCG CCTTTGGTTT TGCGCTGATT GTTGGCATCC CCATGGGAAT GATTGCCGGG ATTACGCGCC ATAAGTGGCA GGATAACTTG ATCAACGCCA TCGCCTTACT GGGCTTTTCA ATCCCGGTGT TCTGGCTGGC GCTTCTGCTG ACGCTGTTTT GTTCACTCAC GCTAGGTTGG TTGCCCGTTT CTGGGCGTTT CGATTTGCTC TACGAAGTGA AACCGATTAC CGGTTTTGCG TTGATTGATG CCTGGCTTTC GGACTCACCG TGGCGGGATG AAATGGTCAT GAGCGCAATT CGCCATATGA TATTACCCGT GATCACCCTG TCGGTTGCGC CAACAACTGA AGTGATCCGA CTAATGCGTA TCAGCACTAT CGAAGTGTAT GACCAGAACT ATGTTAAAGC AGCGGCGACC CGCGGTTTGT CGCGCTTTAC TATTTTGCGT CGCCACGTTC TGCATAACGC GTTACCTCCG GTTATTCCTC GCCTGGGCTT ACAGTTTTCT ACCATGCTGA CGCTGGCGAT GATCACCGAA ATGGTCTTTA GCTGGCCGGG TTTAGGGCGC TGGTTAATTA ACGCTATCCG CCAGCAGGAT TACGCAGCCA TTTCCGCCGG AGTGATGGTG TGTGGCTCAC TGGTCATTAT TGTTAACGTG ATTTCTGATA TTTTGGGTGC CATGGCTAAC CCTCTGAAAC ATAAGGAATG GTATGCCTTA CGATAG
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Protein sequence | MIIFTLRRIL LLIVTLFLLT FVGFSLSYFT PHAPLQGASL WNAWVFWFNG LIHWDFGVSS INGQPIAEQL KEVFPATMEL CILAFGFALI VGIPMGMIAG ITRHKWQDNL INAIALLGFS IPVFWLALLL TLFCSLTLGW LPVSGRFDLL YEVKPITGFA LIDAWLSDSP WRDEMVMSAI RHMILPVITL SVAPTTEVIR LMRISTIEVY DQNYVKAAAT RGLSRFTILR RHVLHNALPP VIPRLGLQFS TMLTLAMITE MVFSWPGLGR WLINAIRQQD YAAISAGVMV CGSLVIIVNV ISDILGAMAN PLKHKEWYAL R
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