Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1820 |
Symbol | gabT1 |
ID | 6143459 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1839045 |
End bp | 1840310 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641616696 |
Product | 4-aminobutyrate transaminase |
Protein accession | YP_001743874 |
Protein GI | 170682308 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.144249 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAACA ATGAATTCCA TCAGCGTCGT CTTTCTGCTA CCCCTCGCGG GGTTGGCGTG ATGTGTAACT TCTTCGCCCA GTCGGCAGAA AACGCCATGC TGAAGGACGT AGAGGGCAAC GAATACATCG ATTTCGCCGC AGGCATTGCG GTGCTGAATA CCGGGCATCG CCACCCTGAT CTGGTCGCGG CGGTGGAGCA GCAATTGCAA CAGTTTACCC ACACGGCGTA TCAGATTGTG CCGTACGAAA GCTACGTCAC CCTGGCGGAG AAAATCAACG CCCTTGCCCC GGTGAGCGGG CAGGCTAAAA CTGCGTTCTT CACCACCGGT GCGGAAGCGG TGGAGAACGC GGTGAAAATC GCCCGCGCCC ATACCGGACG CCCTGGCGTG ATTGCGTTTA GCGGCGGCTT CCACGGTCGT ACATATATGA CCATGGCGCT GACCGGAAAG GTCGCGCCGT ACAAAATCGG CTTCGGCCCG TTCCCCGGTT CGGTATATCA CGTACCTTAT CCGTCAGATT TACATGGCGT TTCAACGCAG GACTCTCTCG ACGCCATCGA ACGCTTGTTT AAATCTGACA TTGAAGCGAA GCAGGTGGCG GCGATTATTT TCGAACCGGT GCAGGGCGAA GGCGGTTTCA ACGTTGCACC AAAAGAGCTG GTTGCCGCCA TTCGCCGCCT GTGCGACGAG CACGGCATTG TGATGATTGC CGATGAAGTG CAAAGCGGCT TTGCGCGTAC CGGTAAACTG TTTGCCATGG ATCACTACGC CGATAAGCCG GACTTAATGA CGATGGCGAA AAGCCTCGCG GGCGGCATGC CGCTTTCGGG CGTGGTCGGT AACGCGAATA TTATGGACGC GCCCGCGCCG GGCGGGTTGG GTGGTACTTA CGCCGGGAAC CCGCTGGCGG TGGCTGCCGC GCACGCTGTG CTCAACATTA TCGACAAAGA ATCACTCTGT GAACGCGCGA ATCAACTGGG CCAGCGCCTG ACAAACACGT TGATTGATGC CAAAGAAAGC GTTCCGGCCA TCGCGGCGGT ACGCGGTCTG GGGTCTATGA TTGCGGCAGA GTTTAACGAT CCGCAAACGG GCGAGCCGTC AGCGGCGATT GCACAGAAAA TCCAGCAACG CGCGCTGGCG CAGGGGCTGC TTCTGCTGAC CTGTGGCGCA TACGGCAACG TGATTCGTTT CCTGTATCCG CTGACCATCC CGGATGCGCA ATTCGATGCG GCAATGAAAA TTTTGCAGGA TGCGCTGAAA GATTAA
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Protein sequence | MSNNEFHQRR LSATPRGVGV MCNFFAQSAE NAMLKDVEGN EYIDFAAGIA VLNTGHRHPD LVAAVEQQLQ QFTHTAYQIV PYESYVTLAE KINALAPVSG QAKTAFFTTG AEAVENAVKI ARAHTGRPGV IAFSGGFHGR TYMTMALTGK VAPYKIGFGP FPGSVYHVPY PSDLHGVSTQ DSLDAIERLF KSDIEAKQVA AIIFEPVQGE GGFNVAPKEL VAAIRRLCDE HGIVMIADEV QSGFARTGKL FAMDHYADKP DLMTMAKSLA GGMPLSGVVG NANIMDAPAP GGLGGTYAGN PLAVAAAHAV LNIIDKESLC ERANQLGQRL TNTLIDAKES VPAIAAVRGL GSMIAAEFND PQTGEPSAAI AQKIQQRALA QGLLLLTCGA YGNVIRFLYP LTIPDAQFDA AMKILQDALK D
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