| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1684 |
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| Symbol | dos |
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| ID | 6147322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 1686392 |
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| End bp | 1688815 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641616560 |
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| Product | cAMP phosphodiesterase |
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| Protein accession | YP_001743738 |
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| Protein GI | 170683445 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCAGG ATGCAGAGGT AATTATGAAG CTAACCGATG CGGATAATGC CGCCGATGGC
ATTTTTTTCC CCGCCCTTGA GCAAAATATG ATGGGTGCGG TGTTAATTAA CGAAAATGAT
GAAGTGATGT TTTTCAACCC CGCCGCAGAG AAGCTCTGGG GGTACAAACG TGAAGAAGTC
ATTGGCAATA ACATTGATAT GCTGATTCCG CGGGATTTGC GTCCTGCGCA TCCTGAATAC
ATTCGTCATA ACCGTGAAGG CGGTAAAGCG CGCGTCGAGG GGATGAGTCG GGAGCTGCAG
CTGGAGAAAA AAGACGGCAG TAAAATCTGG ACCCGTTTTG CGCTATCGAA AGTGAGCGCC
GAGGGGAAAG TTTATTACCT GGCGCTGGTA CGGGATGCCA GCGTAGAAAT GGCGCAAAAA
GAACAGACCC GACAATTGAT TATTGCCGTT GACCATCTCG ACCGACCGGT GATTGTCCTC
GATCCGGAAC GCCATATTGT GCAGTGCAAT CGCGCATTTA CCGAAATGTT TGGTTACTGC
ATTAGCGAAG CCAGCGGTAT GCAGCCCGAT TCACTCCTTA ACATTCCTGA ATTCCCTGCC
GATAACCGCA TTCGTTTACA ACAGTTGCTA TGGAAAACCG CCCGCGATCA GGATGAATTT
CTGCTGTTGA CGCGCACCGG TGAAAAAATC TGGATTAAAG CCTCTATCAG CCCGGTTTAT
GACGTGCTCG CGCATCTGCA GAACCTGGTA ATGACCTTCT CGGATATCAC CGAAGAACGG
CAAATCCGCC AGCTTGAAGG CAATATTCTC GCCGCCATGT GCAGCAGCCC GCCATTTCAT
GAAATGGGGG AAATCATTTG TCGTAACATC GAATCTGTAC TCAACGAATC GCATGTTTCG
CTGTACGCGC TGCGCAACGG GATGCCGATA CACTGGGCGT CATCTTCGCA CGGTACAGAA
GTTCAAAATG CGCAAAGCTG GTCAGCGACC ATTCGTCAGC GTGATGGCGC GCCGGCGGGG
ATCCTGCAAA TTAAAACCTC GTCAGGAGCA GAAACCAGCG CCTTTATCGA ACGCGTGGCA
GATATCAGCC AGCATATGGC CGCGCTGGCG CTGGAACAGG AAAAAAGCCG TCAGCATATT
GAACAACTCA TCCAATTTGA TCCGATGACC GGTCTGCCAA ATCGCAATAA CCTGCACAAT
TACCTCGATG ACCTGGTCGA CAAAGCCGTC TCTCCAGTGG TGTATCTCAT CGGTGTTGAC
CATATTCAGG ATGTGATTGA TAGCCTTGGC TATGCGTGGG CCGATCAGGC ATTGCTGGAA
GTGGTCAATC GCTTTCGTGA AAAACTCAAA CCGGATCAAT ATCTCTGTCG TATCGAAGGT
ACGCAGTTTG TCCTCGTGAG CCTCGAAAAC GACGTCAGTA ACATTACGCA GATCGCCGAT
GAGCTACGGA ATGTGGTCAG CAAGCCGATA ATGATTGACG ATAAACCATT CCCGCTCACC
TTGAGCATTG GCATCAGCTA CGACGTGGGT AAAAACCGCG ATTACCTGCT CTCCACTGCT
CACAATGCAA TGGATTTTAT TCGCAAAAAT GGCGGTAACG GCTGGCAGTT CTTCAGCCCG
GCGATGAACG AAATGGTAAA AGAGCGTTTG GTTTTAGGCG CGGCGCTGAA AGAAGCAATT
AGCAATAACC AACTGAAACT GGTTTACCAG CCACAAATCT TCGCAGAAAC GGGTGAACTG
TACGGCATCG AAGCCCTTGC TCGCTGGCAC GATCCCCTGC ATGGTCATGT GCCCCCTTCA
CGGTTTATTC CTCTCGCAGA AGAGATCGGT GAAATCGAAA ATATTGGACG CTGGGTCATC
GCGGAAGCTT GCCGTCAGTT AGCAGAATGG CGTAGCCAGA ATATTCATAT CCCGGCGTTA
TCCGTGAACT TGTCGGCGCT GCACTTTCGC AGTAATCAGC TGCCTAATCA GGTGTCTGAT
GCAATGCAAG CCTGGGGTAT TGACGGCCAC CAGCTGACGG TAGAAATCAC GGAAAGCATG
ATGATGGAAC ACGATACCGA AATCTTTAAG CGCATTCAGA TCCTGCGCGA TATGGGCGTG
GGTTTATCGG TAGATGATTT TGGCACGGGC TTTTCCGGAT TATCCCGCTT AGTCAGTCTT
CCAGTAACGG AAATCAAAAT TGACAAAAGT TTTGTCGATC GTTGTCTGAC CGAAAAACGC
ATCCTTGCCT TACTTGAAGC CATTACCAGC ATTGGGCAAA GCCTTAATTT AACCGTCGTG
GCGGAAGGCG TCGAAACCAA AGAGCAATTT GAGATGCTAC GCAAGATCCA CTGTCGCGTT
ATTCAGGGAT ATTTCTTTTC CCGCCCCCTA CCCGCCGAAG AAATTCCAGG CTGGATGAGC
AGCGTGTTAC CGCTGAAAAT CTGA
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| Protein sequence | MRQDAEVIMK LTDADNAADG IFFPALEQNM MGAVLINEND EVMFFNPAAE KLWGYKREEV
IGNNIDMLIP RDLRPAHPEY IRHNREGGKA RVEGMSRELQ LEKKDGSKIW TRFALSKVSA
EGKVYYLALV RDASVEMAQK EQTRQLIIAV DHLDRPVIVL DPERHIVQCN RAFTEMFGYC
ISEASGMQPD SLLNIPEFPA DNRIRLQQLL WKTARDQDEF LLLTRTGEKI WIKASISPVY
DVLAHLQNLV MTFSDITEER QIRQLEGNIL AAMCSSPPFH EMGEIICRNI ESVLNESHVS
LYALRNGMPI HWASSSHGTE VQNAQSWSAT IRQRDGAPAG ILQIKTSSGA ETSAFIERVA
DISQHMAALA LEQEKSRQHI EQLIQFDPMT GLPNRNNLHN YLDDLVDKAV SPVVYLIGVD
HIQDVIDSLG YAWADQALLE VVNRFREKLK PDQYLCRIEG TQFVLVSLEN DVSNITQIAD
ELRNVVSKPI MIDDKPFPLT LSIGISYDVG KNRDYLLSTA HNAMDFIRKN GGNGWQFFSP
AMNEMVKERL VLGAALKEAI SNNQLKLVYQ PQIFAETGEL YGIEALARWH DPLHGHVPPS
RFIPLAEEIG EIENIGRWVI AEACRQLAEW RSQNIHIPAL SVNLSALHFR SNQLPNQVSD
AMQAWGIDGH QLTVEITESM MMEHDTEIFK RIQILRDMGV GLSVDDFGTG FSGLSRLVSL
PVTEIKIDKS FVDRCLTEKR ILALLEAITS IGQSLNLTVV AEGVETKEQF EMLRKIHCRV
IQGYFFSRPL PAEEIPGWMS SVLPLKI
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